View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_16 (Length: 379)
Name: NF1497_low_16
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 357
Target Start/End: Complemental strand, 35354636 - 35354295
Alignment:
| Q |
20 |
ggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatacta |
119 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
35354636 |
ggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatataatatacta |
35354537 |
T |
|
| Q |
120 |
gtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaagagtattatttaaaggg----n |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35354536 |
gtgcagtgaacaatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaaaagtattatttaaagggaaaat |
35354437 |
T |
|
| Q |
216 |
nnnnnnnnnnnnnnttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354436 |
aaaaaaaaaaaaaattggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttgg |
35354337 |
T |
|
| Q |
316 |
taacgtgaaatagaaatccaaatctggttgtgtagcattctg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354336 |
taacgtgaaatagaaatccaaatctggttgtgtagcattctg |
35354295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 35369781 - 35369647
Alignment:
| Q |
20 |
ggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatacta |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||| || |||| | |
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| T |
35369781 |
ggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatgtagtataaca |
35369682 |
T |
|
| Q |
120 |
gtgcagtgaacaatatttgatcatccctgcaaatg |
154 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |
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| T |
35369681 |
gtgcagtgaacaaaatttggtcatccctgcaaatg |
35369647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 20 - 153
Target Start/End: Complemental strand, 35379140 - 35379007
Alignment:
| Q |
20 |
ggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatacta |
119 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||| | |||| ||||| ||||||| | |
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| T |
35379140 |
ggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatataaagtatgctatacaatatacga |
35379041 |
T |
|
| Q |
120 |
gtgcagtgaacaatatttgatcatccctgcaaat |
153 |
Q |
| |
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|| |||||||||| |||||||||||||||||||| |
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|
| T |
35379040 |
gtacagtgaacaacatttgatcatccctgcaaat |
35379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 230 - 357
Target Start/End: Complemental strand, 35369456 - 35369329
Alignment:
| Q |
230 |
ttggaactaaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaataga |
329 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||| |||||||| ||| ||||||||| || ||||| ||||| |
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| T |
35369456 |
ttggaattaaccaattggtttctctatcgacttgttcaaattcaaggcttttgtcaacaattttgcttttgcctctagcagtttcatatcgtgagataga |
35369357 |
T |
|
| Q |
330 |
aatccaaatctggttgtgtagcattctg |
357 |
Q |
| |
|
|||||||||||| ||||||||||||||| |
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|
| T |
35369356 |
aatccaaatctgattgtgtagcattctg |
35369329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 247 - 357
Target Start/End: Complemental strand, 35378323 - 35378213
Alignment:
| Q |
247 |
gtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaatctggttgt |
346 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||| || |||| |||||||||||||| || ||||| | |||| ||||||| || |||| |
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|
| T |
35378323 |
gtttctctgtcgacttgttcgaattcaaggcctttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagacagaagtccaaatttgattgt |
35378224 |
T |
|
| Q |
347 |
gtagcattctg |
357 |
Q |
| |
|
||||||||||| |
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|
| T |
35378223 |
gtagcattctg |
35378213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 19684202 - 19684048
Alignment:
| Q |
20 |
ggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatacta |
119 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | || |||||||||||| |||| ||||||| | | || |
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| T |
19684202 |
ggtccagcatgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaagtatataaaacatta |
19684103 |
T |
|
| Q |
120 |
gtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
19684102 |
atgcagtgaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 238 - 357
Target Start/End: Complemental strand, 19683783 - 19683664
Alignment:
| Q |
238 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
337 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||||||||||| | |
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| T |
19683783 |
aaccaattggtttctctgtcgacttggtcgaattccaggcctttgtcaacaattcttctttttcctttagcagtttggtagcgtgagatagaaatccata |
19683684 |
T |
|
| Q |
338 |
tctggttgtgtagcattctg |
357 |
Q |
| |
|
|||| || |||||||||||| |
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|
| T |
19683683 |
tctgattatgtagcattctg |
19683664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 19630595 - 19630749
Alignment:
| Q |
20 |
ggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatacta |
119 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |||||| | || |
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|
| T |
19630595 |
ggtccagcatgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtatagtatatagaaggtta |
19630694 |
T |
|
| Q |
120 |
gtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
174 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630695 |
gtgcagtcaacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 19632560 - 19632678
Alignment:
| Q |
238 |
aaccaattggtttctctatcaacttgttcgaattcaaggcctttgtcaacaatcttgctttttcctttagcagtttggtaacgtgaaatagaaatccaaa |
337 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||| |||| |||||||||||| || |||| |||||||||||||| || ||||| ||||||||||| | |
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|
| T |
19632560 |
aaccagttggtttctctgtcgacttgttcgaattctaggcatttgtcaacaattctgtttttgcctttagcagtttgatagcgtgagatagaaatccaga |
19632659 |
T |
|
| Q |
338 |
tctggttgtgtagcattct |
356 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
19632660 |
tctggctgtgtagcattct |
19632678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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