View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_17 (Length: 377)
Name: NF1497_low_17
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 361
Target Start/End: Original strand, 37965796 - 37966148
Alignment:
| Q |
9 |
agcataggtcatatttaatcagagatgtccctattatatgaaaaaggtgaatttatattaaagattagaaatttagaatttgcttattcataagtaagga |
108 |
Q |
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| T |
37965796 |
agcataggtcatatttaatcagagatgtccctattatatgaaaaaggtgaatttatattaaagattagaaatttagaatttgcttattcataagtaagga |
37965895 |
T |
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| Q |
109 |
caaaccatcatcttcaatctttgctccatgtgaatagatatattttgaattagtcttctcaattattttatatttacaaactgaatgtttctaagattaa |
208 |
Q |
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| T |
37965896 |
caaaccatcatcttcaatctttgctccatgtgaatagatatattttcaattagtcttctcaattattttataattacaaactgaatgtttctaagattaa |
37965995 |
T |
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| Q |
209 |
aattgttgtttaattatttttagagatagtgatgttgtgttatgtttaaaataacaaccatgcatgtgaagcaaattattgggtctattttgatgggtcc |
308 |
Q |
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| T |
37965996 |
aattgttgtttaattatttttggagatagtgatgttgtgttatgtttaaaataacaaccgtgcatgtgaagcaaattattgggcctattttgatgggtcc |
37966095 |
T |
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| Q |
309 |
ctacaatcatcactgcacaggaaaagaacaaaaatcccaagagacatgatagg |
361 |
Q |
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| T |
37966096 |
ctacaatcatcactgcacaggaaaagaacaaaaatcccaagagacatgatagg |
37966148 |
T |
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