View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_18 (Length: 368)
Name: NF1497_low_18
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_18 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 49517938 - 49518287
Alignment:
| Q |
1 |
aaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgttaagaagagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49517938 |
aaaaataaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgttaagaagagga |
49518037 |
T |
|
| Q |
101 |
agaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaagagcttgaactatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
49518038 |
agaaagcacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaa--------------agcttgaactatt |
49518123 |
T |
|
| Q |
201 |
gcttgctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgat |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49518124 |
gcttcctgatgacaaggggatagaaactggtctcaagggatataatctaaaatttaaaaaaaggaaggacaaaatggggaaggagaatgttattattgat |
49518223 |
T |
|
| Q |
301 |
gagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttctctctc |
364 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
49518224 |
gagggtaaagtaccaaacagtacatatagtgatgatcaacgttttgttgcacttcttttctctc |
49518287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 346
Target Start/End: Original strand, 27747322 - 27747640
Alignment:
| Q |
7 |
aaattgaagtattcatcagatgatgatagtgatcaacaagctaatgaagaagcagatgagttcctcattgaggaaccttgtgttaagaagaggaagaaag |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| || ||||| |||| |||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
27747322 |
aaatcgaagtattcatcagatgatgatagtgatcaacaagttattgaagcagcaaatgagttc---attgaggaacctagtgttaagaagaggaagaaga |
27747418 |
T |
|
| Q |
107 |
cacaaatgagtaaaaatgacaaagatcataataacctccaacacatggatatggttgctgttgacaaagcaagcaaagaagagcttgaactattgcttgc |
206 |
Q |
| |
|
|| ||| |||||||| |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27747419 |
cagaaaagagtaaaactgacaa---tcata---------------tggatatagttgctgttgacaaagcaagcaaagaagagcttgagttattgcttgc |
27747500 |
T |
|
| Q |
207 |
tgatgacaaggggatagaaactggtctcaagggatataatctaaaatttnnnnnnnggaaggacaaaatggggaaggagaatgttattattgatgagggt |
306 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
27747501 |
tgatgacaaggcgacagaaactggtctcaaaggatatagtctaaaatttaaaaaaaggaaggacaaaatgggaaaggagaatgttattattgatgagggt |
27747600 |
T |
|
| Q |
307 |
aaagtaccaaacagtacatatagtgatgatcaacgttttg |
346 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
27747601 |
aaagttccaaacagtacatatagtgatgatccacgttttg |
27747640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 171 - 248
Target Start/End: Complemental strand, 38527452 - 38527375
Alignment:
| Q |
171 |
caaagcaagcaaagaagagcttgaactattgcttgctgatgacaaggggatagaaactggtctcaagggatataatct |
248 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
38527452 |
caaagcaagcaaagaagagcttgaactgttgcttgctgatgacaaggggacaggtactggtctcaagggatataatct |
38527375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University