View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_2 (Length: 739)
Name: NF1497_low_2
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_2 |
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| [»] scaffold1079 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Complemental strand, 30347857 - 30347478
Alignment:
| Q |
10 |
aagaatatggggaacaattacccatttaccttatattttctttttcttctgttatctagccctgtcaaatagacattttatctttcgatcatctttcggt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30347857 |
aagaatatggggaacaattacccatttaccttatattttctttttcttctgttatctagccctgtcaaatagacattttttctttcgatcatctttcggt |
30347758 |
T |
|
| Q |
110 |
tgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcatgaaatatcgattgcctttgcgtgaaagtacgatactccaaattcg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347757 |
tgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcatgaaatatcgattgcctttgcgtgaaagtacgatactccaaattcg |
30347658 |
T |
|
| Q |
210 |
gaagtctaagagttttatcaaactctcttggtgnnnnnnnntgtgaataaaagataccgctgaattgaatttagtccacgaatctaagaaatagggagaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
30347657 |
gaagtctaagagttttatcaaactctcttggtgaaaaaaaatgtgaataaaagataccgctgaattgaattcagtccacaaatctaagaaatagggagaa |
30347558 |
T |
|
| Q |
310 |
ttcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgttccttcatattaagtaagactcc |
389 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347557 |
ttcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgttccttcatattaagtaagactcc |
30347478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 464 - 722
Target Start/End: Complemental strand, 30347403 - 30347146
Alignment:
| Q |
464 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaattgcaaaagaaaaatcaaacttcattagctcaattctgtaa |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347403 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaattgcaaaagaaaaatcaaacttcattagctcaattctgtaa |
30347304 |
T |
|
| Q |
564 |
tttaggaaccttccccctacccccaaaaaatggtgaaaacagaacatacaagtttcatttgactttatgaatttgaaagatgctatttttacttcnnnnn |
663 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347303 |
tttaggaaccttccccctacccccaaaaaatggtgaaaacagagcatacaagtttcatttgactttatgaatttgaaagatgctatttttacttcttttt |
30347204 |
T |
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| Q |
664 |
nngctcatgtgttccaacgttctgttgagataatttatttattctttttacttatcact |
722 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30347203 |
ttgctcatgtgttcc-atgttctgttgagataatttatttattctttttacttatcact |
30347146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 67 - 389
Target Start/End: Complemental strand, 18349176 - 18348854
Alignment:
| Q |
67 |
agccctgtcaaatagacattttatctttcgatcatctttcggttgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcatga |
166 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
18349176 |
agccctgtcaaatagacattttttctttcgatcatctttcggttgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcgtga |
18349077 |
T |
|
| Q |
167 |
aatatcgattgcctttgcgtgaaagtacgatactccaaattcggaagtctaagagttttatcaaactctcttggtgnnnnnnnntgtgaataaaagatac |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18349076 |
aatatcgattgcctttgcgtgaaagtacgatactccaaattcggaagtctaagagttttatcaaactctcttggtgaaaaaaaatgtgaataaaagatac |
18348977 |
T |
|
| Q |
267 |
cgctgaattgaatttagtccacgaatctaagaaatagggagaattcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgt |
366 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18348976 |
cgctgaattgaattcagtccacgaatctaagaaatagtgagaattcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgt |
18348877 |
T |
|
| Q |
367 |
tccttcatattaagtaagactcc |
389 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
18348876 |
tccttcatattaagtaagactcc |
18348854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 67 - 389
Target Start/End: Complemental strand, 16900577 - 16900255
Alignment:
| Q |
67 |
agccctgtcaaatagacattttatctttcgatcatctttcggttgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcatga |
166 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16900577 |
agccctgtcaaatagacattttttctttcgatcatctttcggttgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcgtga |
16900478 |
T |
|
| Q |
167 |
aatatcgattgcctttgcgtgaaagtacgatactccaaattcggaagtctaagagttttatcaaactctcttggtgnnnnnnnntgtgaataaaagatac |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16900477 |
aatatcgattgcctttgcgtgaaagtacgatactccaaattcggaagtctaagagttttatcaaactctcttggtgaaaaataatgtgaataaaagatac |
16900378 |
T |
|
| Q |
267 |
cgctgaattgaatttagtccacgaatctaagaaatagggagaattcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgt |
366 |
Q |
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| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16900377 |
cactgaattgaattcagtccacgaatctaagaaatagtgagaattcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgt |
16900278 |
T |
|
| Q |
367 |
tccttcatattaagtaagactcc |
389 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
16900277 |
tccttcatattaagtaagactcc |
16900255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 522
Target Start/End: Complemental strand, 16900148 - 16900090
Alignment:
| Q |
464 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaa |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16900148 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaa |
16900090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 464 - 522
Target Start/End: Complemental strand, 18348711 - 18348653
Alignment:
| Q |
464 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaa |
522 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18348711 |
ccaaaagatttcacttcaattgattttggttattcatgaggtactaggattcccacgaa |
18348653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 304 - 379
Target Start/End: Complemental strand, 26257494 - 26257419
Alignment:
| Q |
304 |
ggagaattcttgctctctctaaatatctctctcaattctaaaatccaaaatttgaacagatgttccttcatattaa |
379 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||||||||| |||| |
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|
| T |
26257494 |
ggagagttcttgctctctctaattatctctctcaattctaaaatccataatttgaatcgatgttccttcatcttaa |
26257419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 26257565 - 26257522
Alignment:
| Q |
196 |
atactccaaattcggaagtctaagagttttatcaaactctcttg |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26257565 |
atactccaaattcggaagtctaagagttttatcaaactctcttg |
26257522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 26257376 - 26257326
Alignment:
| Q |
472 |
tttcacttcaattgattttggttattcatgaggtactaggattcccacgaa |
522 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||| ||||||||||||||| |
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|
| T |
26257376 |
tttcacttaaattgattttgattattcattaggtaataggattcccacgaa |
26257326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1079 (Bit Score: 102; Significance: 3e-50; HSPs: 1)
Name: scaffold1079
Description:
Target: scaffold1079; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 67 - 359
Target Start/End: Complemental strand, 1246 - 939
Alignment:
| Q |
67 |
agccctgtcaaatagacattttatctttcgatcatctttcggttgttaatacgatagataaggatccctactacaaaaaatactacattcttgatcatga |
166 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| ||||| |||||||||||||| ||||||| | |||||||||| | ||||||| ||||||| ||| |
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|
| T |
1246 |
agccctgtcaaatagagattttttctttcgaccatatttcgattgttaatacgatatataaggaccgctactacaaatagtactacacccttgatcgtga |
1147 |
T |
|
| Q |
167 |
aatatcgattgcct---------------ttgcgtgaaagtacgatactccaaattcggaagtctaagagttttatcaaactctcttggtgnnnnnnnnt |
251 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||||||||||| ||| ||||||||||| |||| |||||||| | |
|
|
| T |
1146 |
aatatcgattgcttgttgaaccctgtgaattgcgtgaaagtaggatactccaaattcgggggtccaagagttttataaaacgttcttggtggaaaaaaat |
1047 |
T |
|
| Q |
252 |
gtgaataaaagataccgctgaattgaatttagtccacgaatctaagaaatagggagaattcttgctctctctaaatatctctctcaattctaaaatccaa |
351 |
Q |
| |
|
|||||| |||||| || |||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| |
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|
| T |
1046 |
gtgaatgaaagatcccactgaattgaattgggtccatgaatctaagaaatagtgagaattcttgatctctctcaatatctctctcaattcgaaaatccag |
947 |
T |
|
| Q |
352 |
aatttgaa |
359 |
Q |
| |
|
||||||| |
|
|
| T |
946 |
gatttgaa |
939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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