View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_23 (Length: 338)
Name: NF1497_low_23
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 42370343 - 42370651
Alignment:
| Q |
13 |
atactcagaacagagatgtttggccaaacaacaccatacataaaatatttcatttgatcctcttcannnnnnnctccacttttcttgcttgttagcattt |
112 |
Q |
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| T |
42370343 |
atactcagaacagagatgtttggccaaacaacaccatacataaaatatttcatttgatcctcttcatttttttctccacttttcttgcttgttagcattt |
42370442 |
T |
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| Q |
113 |
aattttcgtcaatttataatggtaatattactggaatcgtaagtgagagaagtggtgaaatcaaaattaaagataaactctgtcatagtcaaaaccaaag |
212 |
Q |
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| T |
42370443 |
aattttcgtcagtttataatggtaatattactggaatcgtaagtgagagaagtggtgaaatcaaaattgaagataaactctgtcatagtcaaaaccaaag |
42370542 |
T |
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| Q |
213 |
atggatgctttcttgaagggatttccacacctttttaggttgcaagtgaaaagatgatgatgatgggaagtggtggttccatgggagttgttgagggtgg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42370543 |
atggatgctttcttgaagggatttccacacctttttaggttgcaagtgaaaagatgatgatgatgggaagtggtggttccatgggagttgttgagggtgg |
42370642 |
T |
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| Q |
313 |
agcctaatt |
321 |
Q |
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|||| |||| |
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| T |
42370643 |
agcccaatt |
42370651 |
T |
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