View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_3 (Length: 663)
Name: NF1497_low_3
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 313 - 648
Target Start/End: Complemental strand, 49254965 - 49254615
Alignment:
| Q |
313 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
412 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49254965 |
ctgaagccagagacaacacagagagagatagcaatagctgtgctagaaagagaaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49254866 |
T |
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| Q |
413 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaac---c |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
49254865 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaaccagc |
49254766 |
T |
|
| Q |
510 |
accctctgtgtctttctctaacaaacctttatccatattttctagcccagaaaattgaa-------------tacattaatattgggatttgaatacgtt |
596 |
Q |
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| T |
49254765 |
accctctctgtctttctctaacaaacctttttccatattttctagcccagaaaattgaatatgtgacaaagttacattaatatt-ggatttgaatacgtt |
49254667 |
T |
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| Q |
597 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
648 |
Q |
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| T |
49254666 |
ggtggaagttgagattattattgaaattggaataaacaatgttcagttcaca |
49254615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 49256208 - 49255932
Alignment:
| Q |
1 |
cagttgcttctggtattgtatatagtgttgagatgattgacaaactggtcatggnnnnnnnnnncaaca-ctaatttataagaatggaatcaatatttga |
99 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||||||||| ||||||| |
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| T |
49256208 |
cagttgcttctggtattgtatagagtgttgagatgattgacaaactggtcatggaaaaaaaaaaaaaaaactaatttataagaatggaatcagtatttga |
49256109 |
T |
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| Q |
100 |
ctataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagttataccatatggataaaacagaagt |
199 |
Q |
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| T |
49256108 |
ctataagtaaccattacaatacaactttcatacacgcaaagtcatctatgcgtaaaactaaacactagggaaagttataccatatggataaaacagaagt |
49256009 |
T |
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| Q |
200 |
ttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
276 |
Q |
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| T |
49256008 |
ttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaatgat |
49255932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 313 - 555
Target Start/End: Complemental strand, 49267227 - 49266985
Alignment:
| Q |
313 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
412 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||| |
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| T |
49267227 |
ctgaagccagagacaccacagagagagatagcaatagctgtgctagaaagagcaagtttacccaaacgaccaaccattatcattgaaataatttgtagaa |
49267128 |
T |
|
| Q |
413 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgcttcttgaaccacc |
512 |
Q |
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|||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
49267127 |
aatattgtgacagagtgacggcgatcataggcagagctagaaaacaaacatctttcacctcttgaaaaaatacaccccatgttatgcttcttgaatcacc |
49267028 |
T |
|
| Q |
513 |
ctctgtgtctttctctaacaaacctttatccatattttctagc |
555 |
Q |
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||| ||||||||||||||||||| || ||||||||||||||| |
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| T |
49267027 |
ttctctgtctttctctaacaaacccttttccatattttctagc |
49266985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 283 - 463
Target Start/End: Original strand, 49274577 - 49274761
Alignment:
| Q |
283 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagca----atagctgtgctagaaagagaaagtttacacaaa |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
49274577 |
caaaagaagacttgcaagaacgctgaacggctgaagccagagacagcacaaagagagatagcaagcaatagctgtgctagaaagagaaagtttacccaaa |
49274676 |
T |
|
| Q |
379 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacat |
463 |
Q |
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| T |
49274677 |
tgaccaaccatcatcattgaaataatttgtagaaaatattgtgacaaagttacactagtcataggcaaagctagaaaaccaacat |
49274761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 313 - 499
Target Start/End: Complemental strand, 49271633 - 49271447
Alignment:
| Q |
313 |
ctgaagccagagacagcacaaagagagatagcaatagctgtgctagaaagagaaagtttacacaaatgaccaaccatcatcattgaaataatttgtagaa |
412 |
Q |
| |
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||||||||||||||| || | ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49271633 |
ctgaagccagagacaccatagagagagatagcaatagctgtggtagaaagagcaagtttacccaaatgaccaaccatcatcattgaaataatttgtagaa |
49271534 |
T |
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| Q |
413 |
aatattgtgacaaagttacactaatcataggcaatgctagaaaacaaacatctttcacctcttgaaaaaatacacgccatgttatgc |
499 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| ||| |||| ||||| ||||| |
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| T |
49271533 |
aatattgtgacaaagttacactaatcataggcaaagctagaaaaccaacatcttctacctcttgaacaaacacaccccatgatatgc |
49271447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 49269004 - 49268906
Alignment:
| Q |
174 |
ttataccatatggataaaacagaagtttcaagctgtggatttggaagaagaccagaaagaaagactaggagctcaaatgaccaccactcaaagctgaaa |
272 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||| ||||||| |
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| T |
49269004 |
ttataccatatggataagactgaagtttcaagctgtggatttggtagaagaccagaaagaaggattaggagttcaaatgaccaccactcaaggctgaaa |
49268906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 49269191 - 49269145
Alignment:
| Q |
1 |
cagttgcttctggtattgtatatagtgttgagatgattgacaaactg |
47 |
Q |
| |
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|||||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
49269191 |
cagttgcttctggtattgtatagattgttgagatgattgataaactg |
49269145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 49273738 - 49273704
Alignment:
| Q |
239 |
taggagctcaaatgaccaccactcaaagctgaaat |
273 |
Q |
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| T |
49273738 |
taggagctcaaatgaccaccactcaaagctgaaat |
49273704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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