View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_30 (Length: 270)
Name: NF1497_low_30
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 14777556 - 14777793
Alignment:
| Q |
16 |
aatataggtggcaacttctttttcacacaagccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactt |
115 |
Q |
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| T |
14777556 |
aatataggtggcaacttctttttcacacaagccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactt |
14777655 |
T |
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| Q |
116 |
tctaaggacacatgtcccttctctaatcgggataattgttattattttaaacaacattcaaacattgcaataatcaacacaaccatatagcatatcctat |
215 |
Q |
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| T |
14777656 |
tctaaggacacgtgtcccttctctaatcgggataattgttattattttaaacaacattcaaacattttaataatcaacacaaccatatagcatatcctat |
14777755 |
T |
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| Q |
216 |
caaccacacaacgtaaaagtaacaaaacacttgatgaa |
253 |
Q |
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| T |
14777756 |
caaccacacaacgtaacaataacaaaacacttgatgaa |
14777793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 47 - 253
Target Start/End: Complemental strand, 34126871 - 34126665
Alignment:
| Q |
47 |
ccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactttctaaggacacatgtcccttctctaatcggg |
146 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34126871 |
ccttattttctagctattaatctactttaccaagaaagttattcagaaaatttccaggcttcctcactttctaaggacacttgtcccttctctaatcggg |
34126772 |
T |
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| Q |
147 |
ataattgttattattttaaacaacattcaaacattgcaataatcaacacaaccatatagcatatcctatcaaccacacaacgtaaaagtaacaaaacact |
246 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
34126771 |
ataattgttattattttaaacaacattcaaacattttaataatcaacacaaccatatagcatatcctatcaaccacacaacgtaatattaacaaaacact |
34126672 |
T |
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| Q |
247 |
tgatgaa |
253 |
Q |
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| T |
34126671 |
tgatgaa |
34126665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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