View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_35 (Length: 254)
Name: NF1497_low_35
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_35 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 16735068 - 16734830
Alignment:
| Q |
1 |
gcaaatttgtttctttgtttgtacaaaatgcaaccaacctaacaatatacctgtgtctgattctacctaatgtcttaatttctgctaaaaagccgttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16735068 |
gcaaatttgtttctttgtttgtacaaaatgcaaccaacctaacaatatacctgtgtctgattctacctaatgtcttaatttctgctgaaaagccgttatc |
16734969 |
T |
|
| Q |
101 |
ggcatgagaagaagaatttcctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16734968 |
ggcatgagaagaagaatttcctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctcca |
16734869 |
T |
|
| Q |
201 |
cctcttcctatcacattgctttcctttatgcaacctatg |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16734868 |
cctcttcctatcacattgctttcctttatgcaacctatg |
16734830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 228
Target Start/End: Original strand, 39226267 - 39226375
Alignment:
| Q |
120 |
cctttgttgattcctaacaatttcttcacagcaatttcatctccatttggcattgttcctttgtacacaacacctgctccacctcttcctatcacattgc |
219 |
Q |
| |
|
|||||||| |||||||| || || |||||||| | || ||||||||||||||||||||| || |||||||| || || ||||||||||| | || | |
|
|
| T |
39226267 |
cctttgttaattcctaataactttttcacagctactttttctccatttggcattgttcctccatatacaacaccagcacctcctcttcctatgatgttac |
39226366 |
T |
|
| Q |
220 |
tttccttta |
228 |
Q |
| |
|
||||||||| |
|
|
| T |
39226367 |
tttccttta |
39226375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University