View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_37 (Length: 249)
Name: NF1497_low_37
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 13349924 - 13349705
Alignment:
| Q |
18 |
ctctttcacaaccagtgtcgcttcaccgtacaattgtttccttccattcaaaatggaccaaacttaaccagatcgtttccttccattttctcttcaatca |
117 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13349924 |
ctctttcacaaccagtgttgtttcaccgtacaattgtttccttccattcaaaatgaaccaaacctaaccagatcgtttccttccattttctcttcaatca |
13349825 |
T |
|
| Q |
118 |
tcaccgtttgttttgattatttcttcaatcagctttgtcaatcttccgtcttcaatcaacttcatcaacctttaagtattttgtgaataagaaactgagt |
217 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
13349824 |
tcactgtttgttttgattatttcttcaatcagcttcgtcaatcttccgtcttcaatcaacttcatcaacctttaagtattttgtgaataagaaattgagt |
13349725 |
T |
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| Q |
218 |
tatttatgattaactatttt |
237 |
Q |
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||||||| ||| |||||||| |
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| T |
13349724 |
tatttataatttactatttt |
13349705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 30240488 - 30240387
Alignment:
| Q |
51 |
ttgtttccttccattcaaaatggaccaaacttaaccagatcgtttccttccattttctcttcaatcatcaccgtttgttttgattatttcttcaatcagc |
150 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||| ||||||| ||| | |||| ||||||| |
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| T |
30240488 |
ttgtttccttccattcaaaatggaccaaacttggccacatcgtttccttccattccgtcttcaatcatcaccttttgtttcaattttgtctttaatcagc |
30240389 |
T |
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| Q |
151 |
tt |
152 |
Q |
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|| |
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| T |
30240388 |
tt |
30240387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 17809444 - 17809365
Alignment:
| Q |
38 |
cttcaccgtacaattgtttccttccattcaaaatggaccaaacttaaccagatcgtttccttccattttctcttcaatca |
117 |
Q |
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||||||||||| || |||||||||| ||||||||||||||||| || || |||| |||||||||||| | |||||||||| |
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| T |
17809444 |
cttcaccgtacgatcgtttccttccgttcaaaatggaccaaacctaccctgatcatttccttccattctgtcttcaatca |
17809365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 19519215 - 19519280
Alignment:
| Q |
61 |
ccattcaaaatggaccaaacttaaccagatcgtttccttccattttctcttcaatcatcaccgttt |
126 |
Q |
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|||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||| ||||| |
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| T |
19519215 |
ccattcaaaatggaccaaacctaactagattcattccttccattttgtcttcaatcatcatcgttt |
19519280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 7622908 - 7622843
Alignment:
| Q |
61 |
ccattcaaaatggaccaaacttaaccagatcgtttccttccattttctcttcaatcatcaccgttt |
126 |
Q |
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|||||||||||||||||||| ||||||||| ||||||||| ||| |||| |||||||| ||||| |
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| T |
7622908 |
ccattcaaaatggaccaaacctaaccagattcattccttccaatttatctttaatcatcatcgttt |
7622843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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