View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_39 (Length: 233)
Name: NF1497_low_39
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_39 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 8719111 - 8718889
Alignment:
| Q |
13 |
gatatatgcatgcttttaactg--gagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaatattcctttttgtct |
110 |
Q |
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| T |
8719111 |
gatatatgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaatattcctttttgtct |
8719012 |
T |
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| Q |
111 |
tcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttatttatgaaacaggta |
210 |
Q |
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| T |
8719011 |
tcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgcttaatatttgtgtttatttatgaaacaggta |
8718912 |
T |
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| Q |
211 |
aaaaagatgataatccatgctgt |
233 |
Q |
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| T |
8718911 |
aaaaagatgataatccatgctgt |
8718889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 8672812 - 8672644
Alignment:
| Q |
13 |
gatatatgcatgcttttaactggagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaatattcctttttgtcttc |
112 |
Q |
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| T |
8672812 |
gatatatgcatgcttttaactggagtttcgtcgccttcctaagaatcacatggcaagagaagacaaacttgaggtgattttaatattcctttttgtcttc |
8672713 |
T |
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| Q |
113 |
ctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaactttgctt |
181 |
Q |
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| T |
8672712 |
ctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagataactttgctt |
8672644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 8591273 - 8591081
Alignment:
| Q |
13 |
gatatatgcatgcttttaactg--gagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaatattcctttttgtct |
110 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
8591273 |
gatatctgcatgcttttaactgaagagtttcgtcgccttcctaagaatcacagggcaagagaagacaaacttgaggtgattttaataatcctttttgcct |
8591174 |
T |
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| Q |
111 |
tcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtagacaac---tttgcttaatatttgtgtttatttat |
200 |
Q |
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| T |
8591173 |
tcctttcttttgatgtgaatttcaaactaagaaagttgaaaaggagaacataattgtggacaactaatttgctttgtttttgtgtttatttat |
8591081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Original strand, 23439926 - 23439967
Alignment:
| Q |
160 |
ataattgtagacaactttgcttaatatttgtgtttatttatg |
201 |
Q |
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| T |
23439926 |
ataattgtagacaactttgctttatttttgtgtttaattatg |
23439967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 23439992 - 23440021
Alignment:
| Q |
200 |
tgaaacaggtaaaaaagatgataatccatg |
229 |
Q |
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| T |
23439992 |
tgaaacaggtaaaaaagatgataatccatg |
23440021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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