View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1497_low_4 (Length: 595)
Name: NF1497_low_4
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Original strand, 54198298 - 54198863
Alignment:
| Q |
17 |
aataatgcacaaaccatgtacaagtataaaacgataaaaaccatatacaagcaaatcttccaaagggccggcttaaattttcactattatatgctcactt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54198298 |
aataatgcacaaaccatgtacaagtataaaacgataaaaaccatatacaagcaaatcttccaaagggccggcttaaattttcactattatatgctcactt |
54198397 |
T |
|
| Q |
117 |
atttgtcttgttatcttttt-atttttgttgacacaaattatgtcttgttttctgaagaggaagaatacgttaaaatcataaagcatatggnnnnnnnn- |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54198398 |
atttgtcttgttatcttttttatttttgttgacacaaattatgtcttgttttctgaagaggaagaatacgttaaaatcataaagcatatggaaaaaaaaa |
54198497 |
T |
|
| Q |
215 |
catcgttttctcaaaccgcatatatactatcagtagcaaggttaattagcttaaccacaaaattaatattaatattaatataaactacactatagactga |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54198498 |
catcgttttctcaaaccgcatatatactatcagtagcaaggttaattagcttaaccacaaaattaat--taatattaatataaactacactatagactga |
54198595 |
T |
|
| Q |
315 |
ctagaaaaacgtacacattgttgtttgaaagaagaaagcaaattaagatggccggaggagctcctggggaaagaacattgaaggaaacaccaacttgggc |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54198596 |
ctagaaaaacgtacacattgttgtttgaaagaagaaagcaaattaagatggccggaggagctcctggggaaagaacattgaaggaaacaccaacttgggc |
54198695 |
T |
|
| Q |
415 |
tgttgctgctgtctgcgcagtgttcgtcatcatctcagtattaattgaacatggaatccataaacttgaaaaggtatacctgtataatataaagttcaat |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54198696 |
tgttgctgctgtctgcgcagtgttcgtcatcatctcagtattaattgaacatggaatccataaacttgaaaaggtatacctgtataatataaagttcaat |
54198795 |
T |
|
| Q |
515 |
aatattgatccattcatcttttggtcttaattaagtttcaagtaaactgagaataagtatctgcagta |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54198796 |
aatattgatccattcatcttttggtcttaattaagtttcaagtaaactgagaataagtatctgcagta |
54198863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University