View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_40 (Length: 231)
Name: NF1497_low_40
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 53128562 - 53128470
Alignment:
| Q |
17 |
aagtaggacaggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgc |
109 |
Q |
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| T |
53128562 |
aagtaggacaggagagcttagtattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgcttctgc |
53128470 |
T |
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Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 53110961 - 53110869
Alignment:
| Q |
17 |
aagtaggacaggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgc |
109 |
Q |
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| T |
53110961 |
aagtaagacaggagagcttagcattttccccaagacttttatagtgctgtctcattgtctgcacttgatgcccaaccaaaagtctgctgctgc |
53110869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 53122196 - 53122293
Alignment:
| Q |
119 |
aaattttatgaaactcaaattctcaatgtaggtctttctccaat-nnnnnnnngatacaggttcaccttgttgtaaaactctcgttgattttcttgga |
215 |
Q |
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| T |
53122196 |
aaattttatgaaactcaaattctcaatgtaggtctttctccaataaaaaaaaagatacaggttcaccttgttgtaaaactctcgttgatattattgga |
53122293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 53116337 - 53116254
Alignment:
| Q |
26 |
aggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgc |
109 |
Q |
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| T |
53116337 |
aggagatcttagtattttcccgaagacctttacagttctgtctcattgtctgcacttgatgcccgatcaaaagtctactgctgc |
53116254 |
T |
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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 15838190 - 15838272
Alignment:
| Q |
27 |
ggagagcttagcattttccccaagactcttgtagttctgtctcattgtctgcacatgatgcccaaacaagagtctgctgctgc |
109 |
Q |
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| T |
15838190 |
ggagagcttagtattttccccaaaacttttgtggtgctgtctcattgtctgcatatgatgcctaggcaaaaatctgctgctgc |
15838272 |
T |
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