View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1497_low_43 (Length: 229)
Name: NF1497_low_43
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1497_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 30468288 - 30468483
Alignment:
| Q |
16 |
cagttgcagtatgatgttgtagttgtagagggtgttagatttcgagtgaatctaagcatgtaatattatattgcatccatagaggatctagtccttttta |
115 |
Q |
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| T |
30468288 |
cagttgcagtatgatgttgcagttgtagggggtgttagatttcgaatgaatctacgcatgtaatattatattgcatccatagaggatctagtcctttcta |
30468387 |
T |
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| Q |
116 |
atctctctttcattctttattttagtctctttaccttttaatggataagcatatatgcgcttataagttttggtattatatatattagtgtgaatttt |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30468388 |
atctctctttcattctttattttagtttctttaccttttaatggataagcatatatgcgcttataagttttggtat--tatatattagtgtgaatttt |
30468483 |
T |
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