View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1497_low_44 (Length: 225)

Name: NF1497_low_44
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1497_low_44
NF1497_low_44
[»] chr5 (7 HSPs)
chr5 (1-209)||(10048363-10048571)
chr5 (13-209)||(10872404-10872597)
chr5 (13-209)||(10877475-10877668)
chr5 (13-209)||(10882546-10882739)
chr5 (43-209)||(10867715-10867881)
chr5 (43-209)||(10886488-10886654)
chr5 (43-209)||(39677409-39677575)
[»] chr8 (1 HSPs)
chr8 (72-206)||(30707490-30707624)


Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 10048571 - 10048363
Alignment:
Q  1 catgcaaggttattatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10048571 catgcaaggttattatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctt 10048472  T
Q  101 tacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctgga 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10048471 tacaagctgcccagctgcaattgcagacataagtgagagttctcctgcaagaactgaaccggctacaatagttgccaattgcctagaatttgctcctgga 10048372  T
Q  201 gtttcttta 209  Q
    |||||||||    
T  10048371 gtttcttta 10048363  T

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Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 10872404 - 10872597
Alignment:
Q  13 ttatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgccc 112  Q
    ||||||| |||||||||||||| |||||   |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||    
T  10872404 ttatttacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgccc 10872500  T
Q  113 agctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10872501 ggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctcttta 10872597  T

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Target: chr5; HSP #3
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 10877475 - 10877668
Alignment:
Q  13 ttatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgccc 112  Q
    ||||||| |||||||||||||| |||||   |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||    
T  10877475 ttatttacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgccc 10877571  T
Q  113 agctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10877572 ggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctcttta 10877668  T

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Target: chr5; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 10882546 - 10882739
Alignment:
Q  13 ttatttatctcacaattgtggttttgtcagctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgccc 112  Q
    ||||||| |||||||||||||| |||||   |||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || |||||||||||    
T  10882546 ttatttacctcacaattgtggtattgtc---tcatgaagcaactttggtgacatctttattcgatctgttgtatttcatgtggcttttaacaagctgccc 10882642  T
Q  113 agctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
     ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10882643 ggctgcaattgcagacatgagtgagagctctcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctcttta 10882739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 10867881 - 10867715
Alignment:
Q  43 ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc 142  Q
    ||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||    
T  10867881 ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc 10867782  T
Q  143 tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
    |||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10867781 tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctcttta 10867715  T

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Target: chr5; HSP #6
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 43 - 209
Target Start/End: Original strand, 10886488 - 10886654
Alignment:
Q  43 ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc 142  Q
    ||||||||| ||||||||||||||||||| | ||||| ||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||||||||||    
T  10886488 ctcatgaagcaactttggtgacatctttatttgatctgttgtatttcatgtggcttttaacaagttgcccggctgcaattgcagacatgagtgagagctc 10886587  T
Q  143 tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
    |||||||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10886588 tcctgcaaggactgaaccagctactatagttgccagttgcctggaatttgctcctggagtctcttta 10886654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 43 - 209
Target Start/End: Complemental strand, 39677575 - 39677409
Alignment:
Q  43 ctcatgaagtaactttggtgacatctttactagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctc 142  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| || ||||| || |||||||||||||||||||| ||||| |||||    
T  39677575 ctcatgaagcaactttggtgacatctttattagatctgttgtatttcatgtggcttttaacaagttgaccagctgcaattgcagacatgagtgaaagctc 39677476  T
Q  143 tcctgcaaggactgaaccggctacaatagttgccaattgcctagaatttgctcctggagtttcttta 209  Q
    |||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||| | ||||||    
T  39677475 tcctgcaaggactgaaccagctactatagttgccaattgcctagagtttgctcctggactctcttta 39677409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 206
Target Start/End: Original strand, 30707490 - 30707624
Alignment:
Q  72 ctagatctattgtatttcatgtggctctttacaagctgcccagctgcaattgcagacataagtgagagctctcctgcaaggactgaaccggctacaatag 171  Q
    |||||||| || ||||||||||| ||||| || || || |||||||||||||||||||| ||||| ||||| || ||||| || ||||| ||||| || |    
T  30707490 ctagatctgttatatttcatgtgactcttaactagttgtccagctgcaattgcagacatgagtgatagctcgccggcaagtaccgaaccagctacgatgg 30707589  T
Q  172 ttgccaattgcctagaatttgctcctggagtttct 206  Q
    | |||||| |||||| |||||| ||||||| ||||    
T  30707590 tggccaatagcctagcatttgcacctggagattct 30707624  T

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