View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1497_low_49 (Length: 207)

Name: NF1497_low_49
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1497_low_49
NF1497_low_49
[»] chr4 (1 HSPs)
chr4 (118-192)||(22291165-22291239)
[»] chr2 (1 HSPs)
chr2 (118-192)||(24124235-24124309)
[»] chr6 (1 HSPs)
chr6 (118-192)||(15433278-15433352)
[»] chr7 (1 HSPs)
chr7 (118-192)||(40964851-40964925)


Alignment Details
Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 22291239 - 22291165
Alignment:
Q  118 gaattaaaacaggtgattcaatcccagttgtataagattgctctggcatatgtaaggatgggattcatggatgtt 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22291239 gaattaaaacaggtgattcaatcccagttgtataagattgctctggcatatgtaaggatgggatttatggatgtt 22291165  T

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Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 24124235 - 24124309
Alignment:
Q  118 gaattaaaacaggtgattcaatcccagttgtataagattgctctggcatatgtaaggatgggattcatggatgtt 192  Q
    |||| |||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  24124235 gaataaaaataggtgattcaatcccagttgtataagattgctccgacatatgtaaggatgggattcatggatgtt 24124309  T

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Target: chr6 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 15433352 - 15433278
Alignment:
Q  118 gaattaaaacaggtgattcaatcccagttgtataagattgctctggcatatgtaaggatgggattcatggatgtt 192  Q
    |||||||||||||||||||||||| | |||||||||||| ||| | |||||||||||||||||||||||||||||    
T  15433352 gaattaaaacaggtgattcaatccaaattgtataagattcctccgacatatgtaaggatgggattcatggatgtt 15433278  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 118 - 192
Target Start/End: Original strand, 40964851 - 40964925
Alignment:
Q  118 gaattaaaacaggtgattcaatcccagttgtataagattgctctggcatatgtaaggatgggattcatggatgtt 192  Q
    ||||||||| ||||||||||||||||||||||||||  |||||  ||||||||||||||  ||||||||||||||    
T  40964851 gaattaaaataggtgattcaatcccagttgtataagtatgctccagcatatgtaaggatatgattcatggatgtt 40964925  T

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