View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1497_low_50 (Length: 204)

Name: NF1497_low_50
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1497_low_50
NF1497_low_50
[»] chr8 (10 HSPs)
chr8 (46-204)||(61451-61609)
chr8 (49-204)||(1365829-1365984)
chr8 (46-176)||(39255673-39255803)
chr8 (48-176)||(44751607-44751735)
chr8 (110-164)||(26492093-26492147)
chr8 (139-176)||(12351828-12351865)
chr8 (49-102)||(39254787-39254840)
chr8 (49-89)||(62248-62288)
chr8 (48-90)||(41859309-41859351)
chr8 (49-89)||(44752578-44752618)
[»] chr4 (18 HSPs)
chr4 (48-202)||(47198604-47198758)
chr4 (49-204)||(28683508-28683662)
chr4 (48-176)||(55159988-55160115)
chr4 (49-102)||(25371540-25371593)
chr4 (92-175)||(43737636-43737719)
chr4 (55-102)||(55159186-55159233)
chr4 (47-89)||(28684240-28684282)
chr4 (51-90)||(3848585-3848624)
chr4 (56-111)||(37275095-37275150)
chr4 (49-90)||(36865724-36865765)
chr4 (49-97)||(38694954-38695002)
chr4 (48-99)||(42544487-42544538)
chr4 (48-90)||(11417686-11417728)
chr4 (48-90)||(29651339-29651381)
chr4 (47-89)||(47199403-47199445)
chr4 (49-90)||(11417944-11417985)
chr4 (54-90)||(3847891-3847927)
chr4 (49-89)||(10424123-10424163)
[»] chr5 (9 HSPs)
chr5 (49-204)||(13655553-13655708)
chr5 (110-175)||(4909593-4909658)
chr5 (48-102)||(13654932-13654986)
chr5 (47-90)||(8204118-8204161)
chr5 (54-97)||(33001937-33001980)
chr5 (48-90)||(33002823-33002865)
chr5 (49-90)||(15184024-15184065)
chr5 (54-83)||(39167454-39167483)
chr5 (49-90)||(39950404-39950445)
[»] chr2 (7 HSPs)
chr2 (48-176)||(5276464-5276592)
chr2 (45-90)||(21471013-21471058)
chr2 (46-81)||(45139689-45139724)
chr2 (47-89)||(14574007-14574049)
chr2 (49-90)||(21471961-21472002)
chr2 (48-97)||(37543257-37543306)
chr2 (49-89)||(13134318-13134358)
[»] chr1 (15 HSPs)
chr1 (49-176)||(37874064-37874191)
chr1 (48-176)||(48869768-48869896)
chr1 (49-176)||(35615767-35615893)
chr1 (62-176)||(17496083-17496197)
chr1 (45-97)||(48972445-48972497)
chr1 (49-83)||(8560839-8560873)
chr1 (48-102)||(35616770-35616824)
chr1 (48-90)||(51987826-51987868)
chr1 (45-90)||(51974433-51974478)
chr1 (49-97)||(193850-193898)
chr1 (49-90)||(16270207-16270248)
chr1 (49-90)||(23440872-23440913)
chr1 (49-90)||(51988471-51988512)
chr1 (49-97)||(23440617-23440665)
chr1 (49-97)||(48971705-48971753)
[»] chr3 (11 HSPs)
chr3 (49-176)||(17226968-17227095)
chr3 (49-102)||(17227943-17227996)
chr3 (43-91)||(41755493-41755541)
chr3 (54-97)||(32490195-32490238)
chr3 (47-90)||(36750444-36750487)
chr3 (56-90)||(49757189-49757223)
chr3 (49-86)||(19132563-19132600)
chr3 (48-97)||(44687163-44687212)
chr3 (110-166)||(4486555-4486611)
chr3 (54-90)||(38922748-38922784)
chr3 (49-97)||(38923665-38923713)
[»] chr6 (9 HSPs)
chr6 (50-176)||(9573636-9573762)
chr6 (49-90)||(7531829-7531870)
chr6 (49-97)||(15083318-15083366)
chr6 (48-90)||(7193337-7193379)
chr6 (48-81)||(7532456-7532489)
chr6 (49-102)||(9574566-9574619)
chr6 (49-90)||(33480635-33480676)
chr6 (54-90)||(22582486-22582522)
chr6 (54-90)||(22587317-22587353)
[»] scaffold1037 (1 HSPs)
scaffold1037 (54-175)||(2034-2155)
[»] scaffold1031 (1 HSPs)
scaffold1031 (54-175)||(2152-2273)
[»] chr7 (15 HSPs)
chr7 (50-90)||(42455036-42455076)
chr7 (54-97)||(7677422-7677465)
chr7 (46-90)||(41194510-41194554)
chr7 (108-159)||(23683461-23683512)
chr7 (47-90)||(38778852-38778895)
chr7 (108-154)||(19737901-19737947)
chr7 (48-90)||(37468909-37468951)
chr7 (48-130)||(47331920-47332002)
chr7 (49-90)||(668179-668220)
chr7 (45-130)||(4984805-4984889)
chr7 (49-90)||(17145622-17145663)
chr7 (49-90)||(37469012-37469053)
chr7 (49-90)||(38779570-38779611)
chr7 (45-130)||(45887947-45888032)
chr7 (54-90)||(7677816-7677852)
[»] scaffold0311 (1 HSPs)
scaffold0311 (48-90)||(167-209)


Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 46 - 204
Target Start/End: Original strand, 61451 - 61609
Alignment:
Q  46 ttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtct 145  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61451 ttaggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtct 61550  T
Q  146 ctcaacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61551 ctcaacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 61609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 1365829 - 1365984
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||| |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1365829 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactgttacaatagtctctc 1365928  T
Q  149 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1365929 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 1365984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 39255803 - 39255673
Alignment:
Q  46 ttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtct 145  Q
    ||||||| ||||||| |||||||| ||||||||||||| ||||||  ||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  39255803 ttaggtggcatttaacttgggaaatgagacttctttcccaccatgggaaagtctttcctaatcattggatcatacaaagaacacactattacaatagtct 39255704  T
Q  146 ctcaacactagattcttatcttactatcttc 176  Q
    |||||||||||||| ||||||||||||||||    
T  39255703 ctcaacactagatttttatcttactatcttc 39255673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 44751607 - 44751735
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 147  Q
    ||||| ||||||| |||||||||||||||||||||| | ||||  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  44751607 aggtggcatttaacttgggaaaggagacttctttcccatcatgggaaagtcttttttaatcattggatcatacaaagaacacactattacaatagtctct 44751706  T
Q  148 caacactagattcttatcttactatcttc 176  Q
    |||||||||||| ||||||||||||||||    
T  44751707 caacactagatttttatcttactatcttc 44751735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 26492093 - 26492147
Alignment:
Q  110 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttat 164  Q
    |||||||| | |||||  |||||||||||||||||||||||||||||||| ||||    
T  26492093 ttggatcacataaagagtacactattacaatagtctctcaacactagatttttat 26492147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 12351865 - 12351828
Alignment:
Q  139 atagtctctcaacactagattcttatcttactatcttc 176  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  12351865 atagtctctcaacactagatttttatcttactatcttc 12351828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 39254787 - 39254840
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    |||| |||||||||||||||||||||||||||||| |||||   ||||||||||    
T  39254787 ggtggcatttaatttgggaaaggagacttctttcccaccataggaaagtctttt 39254840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 62288 - 62248
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||||||||||||||| |||||||||||||||||| |||||    
T  62288 ggtgacatttaatttgagaaaggagacttctttcccaccat 62248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 41859309 - 41859351
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  41859309 aggtgccatttaatttgggaaaggagagttctttcccaccatg 41859351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 44752618 - 44752578
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||| ||||||| |||||||||||||||||||||| |||||    
T  44752618 ggtggcatttaacttgggaaaggagacttctttcccaccat 44752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 1e-70; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 48 - 202
Target Start/End: Original strand, 47198604 - 47198758
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 147  Q
    |||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47198604 aggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 47198703  T
Q  148 caacactagattcttatcttactatcttcactaaccattgaaactgtgattcttt 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  47198704 caacactagattcttatcttactatcttcactaaccattgaaacttggattcttt 47198758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 49 - 204
Target Start/End: Original strand, 28683508 - 28683662
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||| ||||||||||||| |||||||||||||||| |  |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28683508 ggtggcatttaatttggggaaggagacttctttcccattatgaaaaagt-ttttctaaccattggatcatacaaagaacgcactattacaatagtctctc 28683606  T
Q  149 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28683607 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 28683662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 48 - 176
Target Start/End: Complemental strand, 55160115 - 55159988
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 147  Q
    ||||| |||||||||||||||||||||||| ||||  ||||||  |||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  55160115 aggtggcatttaatttgggaaaggagactt-tttctcaccatgggaaagtcttttctaatcattggatcatataaagaacacactattacaatagtctct 55160017  T
Q  148 caacactagattcttatcttactatcttc 176  Q
    |||||||||||| ||||||||||||||||    
T  55160016 caacactagatttttatcttactatcttc 55159988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 25371593 - 25371540
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  25371593 ggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagtatttt 25371540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 43737636 - 43737719
Alignment:
Q  92 aaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 175  Q
    |||||| |||| |||  ||||||||||| ||||||||||||||||| |||| |||| |||||| |||| |||| ||||||||||    
T  43737636 aaaagtgttttataattattggatcatataaagaacacactattactatagcctcttaacactggatttttatattactatctt 43737719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 55159186 - 55159233
Alignment:
Q  55 atttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||    
T  55159186 atttaatttgggaaaggagacttctttcctaccatgggaaagtctttt 55159233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 28684282 - 28684240
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  28684282 taggtgacatttaatttgggaaaggagacttttttcctaccat 28684240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 3848624 - 3848585
Alignment:
Q  51 tgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  3848624 tgacatttaatttgggaaaggagacttctttcccaccatg 3848585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 37275095 - 37275150
Alignment:
Q  56 tttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccatt 111  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||  |||||||    
T  37275095 tttaatttgggaaaggagacttctttcccaccatgagaaagtttttttaaaccatt 37275150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 36865765 - 36865724
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||||||||||||||||||||| |||||||| ||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatg 36865724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 38695002 - 38694954
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 42544487 - 42544538
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtct 99  Q
    ||||| ||||||||||||||||| |||||| ||||| |||||| ||||||||    
T  42544487 aggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtct 42544538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 11417686 - 11417728
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  11417686 aggtgccatttaatttgggaaaggagagttctttcccaccatg 11417728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 29651381 - 29651339
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  29651381 aggtgccatttaatttgggaaaggagagttctttcccaccatg 29651339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 47199445 - 47199403
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||||| |||||||||||||||| ||||||||||||| |||||    
T  47199445 taggtggcatttaatttgggaaaagagacttctttcccaccat 47199403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 11417985 - 11417944
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatg 11417944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 3847891 - 3847927
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatg 3847927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 10424123 - 10424163
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccat 10424163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 108; Significance: 2e-54; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 13655708 - 13655553
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||| |||||||||||||||| ||||||||||||| |  |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13655708 ggtggcatttaatttgggaaaagagacttctttcccattatgggaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 13655609  T
Q  149 aacactagattcttatcttactatcttcactaaccattgaaactgtgattctttcc 204  Q
    ||||||  |||||||||||||||||||||||||||||| ||| || ||||||||||    
T  13655608 aacactgaattcttatcttactatcttcactaaccattaaaattgcgattctttcc 13655553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 4909658 - 4909593
Alignment:
Q  110 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatcttactatctt 175  Q
    |||||||| | ||||| ||||||||||||||||||||||||||||||||| |||||| || |||||    
T  4909658 ttggatcacataaagagcacactattacaatagtctctcaacactagatttttatctcaccatctt 4909593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 13654932 - 13654986
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    |||||||||||||||||||||||||||||||||||| |||||   ||||||||||    
T  13654932 aggtgacatttaatttgggaaaggagacttctttcccaccataggaaagtctttt 13654986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 8204118 - 8204161
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  8204118 taggtgccatttaatttgggaaaggagagttctttcccaccatg 8204161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 33001937 - 33001980
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||    
T  33001937 catttaatttgggaaaggagagttctttcccaccatggaaaagt 33001980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 33002865 - 33002823
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  33002865 aggtgtcatttaatttgggaaaggagagttctttcccaccatg 33002823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 15184065 - 15184024
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatg 15184024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 39167483 - 39167454
Alignment:
Q  54 catttaatttgggaaaggagacttctttcc 83  Q
    ||||||||||||||||||||||||||||||    
T  39167483 catttaatttgggaaaggagacttctttcc 39167454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 39950404 - 39950445
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatg 39950445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 5276464 - 5276592
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 147  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||  |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  5276464 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctct 5276563  T
Q  148 caacactagattcttatcttactatcttc 176  Q
    |||||||||||| ||||||||||||||||    
T  5276564 caacactagatttttatcttactatcttc 5276592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 21471013 - 21471058
Alignment:
Q  45 tttaggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  21471013 tttaggtgccatttaatttgggaaaggagagttctttcccaccatg 21471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 46 - 81
Target Start/End: Original strand, 45139689 - 45139724
Alignment:
Q  46 ttaggtgacatttaatttgggaaaggagacttcttt 81  Q
    ||||||| ||||||||||||||||||||||||||||    
T  45139689 ttaggtggcatttaatttgggaaaggagacttcttt 45139724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 14574049 - 14574007
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||||| ||||||||||||||||||||| |||||||| |||||    
T  14574049 taggtgccatttaatttgggaaaggagagttctttcccaccat 14574007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 21472002 - 21471961
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatg 21471961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 37543257 - 37543306
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    ||||| |||||||| |||||||| | |||||||||||| |||||||||||    
T  37543257 aggtgccatttaatatgggaaagtaaacttctttcctatcatgaaaaagt 37543306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 13134318 - 13134358
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccat 89  Q
    |||| ||||||||||||||||||||| |||||||| |||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccat 13134358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 37874064 - 37874191
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||||||||||| |||||||| ||||||||||||| ||||||  ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  37874064 ggtgacatttaacttgggaaatgagacttctttcccaccatgggaaagtctttactaatcattggatcatacaaagaacacactattacaatagtctctc 37874163  T
Q  149 aacactagattcttatcttactatcttc 176  Q
    ||||||||||| ||||||||||||||||    
T  37874164 aacactagatttttatcttactatcttc 37874191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 176
Target Start/End: Original strand, 48869768 - 48869896
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctct 147  Q
    ||||||||||||| |||||||||||||||||||| | ||||||  ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48869768 aggtgacatttaacttgggaaaggagacttcttttccaccatgggaaaatcttttctaatcattggatcatacaaagaacacactattacaatagtctct 48869867  T
Q  148 caacactagattcttatcttactatcttc 176  Q
    |||||||||||| ||||| ||||||||||    
T  48869868 caacactagatttttatcatactatcttc 48869896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 35615767 - 35615893
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||| ||||||| |||| ||||||||||||||||| ||||||  ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  35615767 ggtggcatttaacttggaaaaggagacttctttcccaccatgggaat-tcttttctaatcattggatcatacaaagaacacactattacaatagtctctc 35615865  T
Q  149 aacactagattcttatcttactatcttc 176  Q
    ||||||||||| ||||||||||||||||    
T  35615866 aacactagatttttatcttactatcttc 35615893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 62 - 176
Target Start/End: Complemental strand, 17496197 - 17496083
Alignment:
Q  62 ttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctcaacactagattct 161  Q
    |||||||||||||||||| | | |||||  |||||| |||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||| |    
T  17496197 ttgggaaaggagacttctattccaccatagaaaagtgttttttaatcattggatcatataaagaacacactattacaatagtctctccacactagattat 17496098  T
Q  162 tatcttactatcttc 176  Q
    |||||||||||||||    
T  17496097 tatcttactatcttc 17496083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 48972497 - 48972445
Alignment:
Q  45 tttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||| ||||||    
T  48972497 tttaggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagt 48972445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 8560839 - 8560873
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcc 83  Q
    |||||||||||||||||||||||||||||||||||    
T  8560839 ggtgacatttaatttgggaaaggagacttctttcc 8560873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 35616824 - 35616770
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||  ||||||||||    
T  35616824 aggtggcatttaacttgggaaaggagacttctttcccaccatgggaaagtctttt 35616770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 51987826 - 51987868
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| |||||||||||||||||||||||||||||| ||||||    
T  51987826 aggtggcatttaatttgggaaaggagacttctttcccaccatg 51987868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 51974433 - 51974478
Alignment:
Q  45 tttaggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||| ||||||||||||||||||||| |||||||| ||||||    
T  51974433 tttaggtgccatttaatttgggaaaggagagttctttcccaccatg 51974478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 16270207 - 16270248
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatg 16270248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 23440913 - 23440872
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatg 23440872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 51988512 - 51988471
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| |||||||||||||||||||||||||||| | ||||||    
T  51988512 ggtggcatttaatttgggaaaggagacttcttttccaccatg 51988471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 23440617 - 23440665
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| ||||||||||||||||||||| |||||||| || ||| ||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagt 23440665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 48971705 - 48971753
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| ||||||||||||||||||||| |||||||| || |||| |||||    
T  48971705 ggtgtcatttaatttgggaaaggagagttctttcccacaatgagaaagt 48971753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 17226968 - 17227095
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctc 148  Q
    |||| ||||||||||||||||||||| |||||||| ||||||  ||| ||||||||||||| || ||||||||||||||||||||||||||||||| |||    
T  17226968 ggtggcatttaatttgggaaaggagatttctttcccaccatgggaaaatcttttctaaccaatgaatcatacaaagaacacactattacaatagtccctc 17227067  T
Q  149 aacactagattcttatcttactatcttc 176  Q
    ||||||||||| ||||||| ||||||||    
T  17227068 aacactagatttttatcttcctatcttc 17227095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 17227996 - 17227943
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17227996 ggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtctttt 17227943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 41755493 - 41755541
Alignment:
Q  43 aatttaggtgacatttaatttgggaaaggagacttctttcctaccatga 91  Q
    |||||||||| ||||||||||||||||||||| || ||||| |||||||    
T  41755493 aatttaggtgtcatttaatttgggaaaggagagttttttcccaccatga 41755541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 32490238 - 32490195
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    ||||||||||||||||||||| |||||||| |||||| ||||||    
T  32490238 catttaatttgggaaaggagagttctttcccaccatggaaaagt 32490195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 36750487 - 36750444
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  36750487 taggtgccatttaatttgggaaaggagagttctttcccaccatg 36750444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 49757223 - 49757189
Alignment:
Q  56 tttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||||||||||||||||| ||||||||||||    
T  49757223 tttaatttgggaaaggagacttttttcctaccatg 49757189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 19132563 - 19132600
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctac 86  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  19132563 ggtgccatttaatttgggaaaggagagttctttcctac 19132600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 44687212 - 44687163
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    ||||| ||||||||||||||||||||| |||||| | |||||| ||||||    
T  44687212 aggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagt 44687163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 4486611 - 4486555
Alignment:
Q  110 ttggatcatacaaagaacacactattacaatagtctctcaacactagattcttatct 166  Q
    |||||||| | ||| | ||||||||||||||||||||| ||||||| ||| ||||||    
T  4486611 ttggatcacataaaaagcacactattacaatagtctctaaacactaaatttttatct 4486555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 38922748 - 38922784
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||||||||||||||||| || ||||||||||||    
T  38922748 catttaatttgggaaaggagagttatttcctaccatg 38922784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 38923713 - 38923665
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| |||||||||||||||| |||| |||||||| |||||| ||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagt 38923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 9573636 - 9573762
Alignment:
Q  50 gtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctca 149  Q
    ||||||||||| |||||||| ||||||||||| | || ||   |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  9573636 gtgacatttaacttgggaaatgagacttcttttccactataggaaagtcttttctaatcattggatcatacaaagaacacactgttacaatagtctctca 9573735  T
Q  150 acactagattcttatcttactatcttc 176  Q
    |||||||||| ||||||||||||||||    
T  9573736 acactagatttttatcttactatcttc 9573762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 7531829 - 7531870
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  7531829 ggtggcatttaatttgggaaaggagacttctttcctaccatg 7531870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 97
Target Start/End: Complemental strand, 15083366 - 15083318
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    |||| ||||||||||||||||||||| |||||||| ||||||| |||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 7193337 - 7193379
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  7193337 aggtgccatttaatttgggaaaggagagttctttcccaccatg 7193379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 7532489 - 7532456
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttcttt 81  Q
    ||||| ||||||||||||||||||||||||||||    
T  7532489 aggtggcatttaatttgggaaaggagacttcttt 7532456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 9574619 - 9574566
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtctttt 102  Q
    |||| ||||||| |||||||||||||||||||||| |||||   ||||||||||    
T  9574619 ggtggcatttaacttgggaaaggagacttctttcccaccataggaaagtctttt 9574566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 33480676 - 33480635
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatg 33480635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22582522 - 22582486
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22582522 catttaatttgggaaaggagagttctttcccaccatg 22582486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22587353 - 22587317
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  22587353 catttaatttgggaaaggagagttctttcccaccatg 22587317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1037 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold1037
Description:

Target: scaffold1037; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 2034 - 2155
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctcaacac 153  Q
    |||||||  ||||||| || |||||||||| || ||| |||||| |||| ||| ||||| ||||||  |||||||||||||||| ||||||||| |||||    
T  2034 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2133  T
Q  154 tagattcttatcttactatctt 175  Q
    | |||| |||| ||||||||||    
T  2134 tggatttttatattactatctt 2155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1031 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold1031
Description:

Target: scaffold1031; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 2152 - 2273
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacacactattacaatagtctctcaacac 153  Q
    |||||||  ||||||| || |||||||||| || ||| |||||| |||| ||| ||||| ||||||  |||||||||||||||| ||||||||| |||||    
T  2152 catttaacctgggaaatgatacttctttcccactatggaaaagtgttttttaatcattgaatcatatgaagaacacactattactatagtctcttaacac 2251  T
Q  154 tagattcttatcttactatctt 175  Q
    | |||| |||| ||||||||||    
T  2252 tggatttttatattactatctt 2273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 42455036 - 42455076
Alignment:
Q  50 gtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  42455036 gtgacatttaatttgggaaaggagacttcttttctaccatg 42455076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 7677422 - 7677465
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatgaaaaagt 97  Q
    ||||||||||||||||||||| |||||||| |||||||||||||    
T  7677422 catttaatttgggaaaggagaattctttcccaccatgaaaaagt 7677465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 41194510 - 41194554
Alignment:
Q  46 ttaggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||| ||||||||||||||||||||| |||||||| ||||||    
T  41194510 ttaggtgccatttaatttgggaaaggagagttctttcccaccatg 41194554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 23683461 - 23683512
Alignment:
Q  108 cattggatcatacaaagaacacactattacaatagtctctcaacactagatt 159  Q
    |||||||||||| || ||||||| |||||||||||||| |||||||| ||||    
T  23683461 cattggatcatataaggaacacattattacaatagtctttcaacacttgatt 23683512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 38778852 - 38778895
Alignment:
Q  47 taggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||    
T  38778852 taggtgccatttaatttgggaaaggagagttctttcccaccatg 38778895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 19737947 - 19737901
Alignment:
Q  108 cattggatcatacaaagaacacactattacaatagtctctcaacact 154  Q
    |||| ||||||| ||  ||||||||||||||||||||||||||||||    
T  19737947 cattagatcatataagaaacacactattacaatagtctctcaacact 19737901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Original strand, 37468909 - 37468951
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  37468909 aggtgccatttaatttgggaaaggagagttctttcccaccatg 37468951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 47332002 - 47331920
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacaca 130  Q
    ||||||||||||||||||||||||  | || ||||| ||||||  ||||  |||||| |||||||||||  | ||||||||||    
T  47332002 aggtgacatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 47331920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 668179 - 668220
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatg 668220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 4984805 - 4984889
Alignment:
Q  45 tttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacaca 130  Q
    |||||||| ||||||||||||||||||  | || ||||| |||||| |||||  |||||| |||||||||||  | ||||||||||    
T  4984805 tttaggtggcatttaatttgggaaaggttagttttttcc-accatggaaaagctttttctgaccattggatctaataaagaacaca 4984889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 17145622 - 17145663
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatg 17145663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 37469053 - 37469012
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatg 37469012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 38779611 - 38779570
Alignment:
Q  49 ggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    |||| ||||||||||||||||||||| |||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatg 38779570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 45 - 130
Target Start/End: Complemental strand, 45888032 - 45887947
Alignment:
Q  45 tttaggtgacatttaatttgggaaaggagacttctttcctaccatgaaaaagtcttttctaaccattggatcatacaaagaacaca 130  Q
    |||||||| ||||||||||||||||||  | || ||||| ||||||  ||||  |||||| |||||||||||  | ||||||||||    
T  45888032 tttaggtggcatttaatttgggaaaggctagttttttcccaccatgggaaagctttttctgaccattggatctaataaagaacaca 45887947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 7677852 - 7677816
Alignment:
Q  54 catttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  7677852 catttaatttgggaaaggagagttctttcccaccatg 7677816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 209 - 167
Alignment:
Q  48 aggtgacatttaatttgggaaaggagacttctttcctaccatg 90  Q
    ||||| ||||||||||||||||||||| |||||||| ||||||    
T  209 aggtgccatttaatttgggaaaggagagttctttcccaccatg 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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