View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1497_low_6 (Length: 517)

Name: NF1497_low_6
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1497_low_6
NF1497_low_6
[»] chr4 (23 HSPs)
chr4 (24-365)||(23408480-23408821)
chr4 (87-361)||(23415712-23415986)
chr4 (88-365)||(23453376-23453653)
chr4 (88-361)||(23868733-23869006)
chr4 (88-361)||(24307224-24307497)
chr4 (88-365)||(23402071-23402348)
chr4 (88-361)||(23885828-23886101)
chr4 (88-361)||(26832736-26833009)
chr4 (88-361)||(26434025-26434298)
chr4 (88-361)||(26435805-26436078)
chr4 (88-361)||(34662045-34662318)
chr4 (399-509)||(24307076-24307186)
chr4 (396-509)||(26832588-26832701)
chr4 (405-505)||(23401931-23402031)
chr4 (140-272)||(23451788-23451920)
chr4 (396-509)||(26433877-26433990)
chr4 (396-509)||(26435657-26435770)
chr4 (405-505)||(23408861-23408961)
chr4 (396-505)||(23416018-23416127)
chr4 (396-505)||(23868589-23868698)
chr4 (396-509)||(23885680-23885793)
chr4 (402-506)||(34662359-34662463)
chr4 (408-505)||(23453696-23453793)
[»] chr1 (6 HSPs)
chr1 (111-361)||(41670401-41670651)
chr1 (91-364)||(40795767-40796040)
chr1 (99-213)||(33216594-33216708)
chr1 (111-361)||(29391467-29391717)
chr1 (88-166)||(45576399-45576477)
chr1 (233-269)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (90-213)||(47317431-47317554)
chr7 (111-361)||(40180297-40180547)
chr7 (233-269)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (126-178)||(14715433-14715485)
chr2 (457-505)||(14715372-14715420)
[»] chr8 (1 HSPs)
chr8 (236-361)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 24 - 365
Target Start/End: Original strand, 23408480 - 23408821
Alignment:
Q  24 cccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataaacgaaatgtctaagagcttgtaaacttagtcacagccttggtgc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  23408480 cccattagttcattacaactcagaaaattaaaacactaagaaaccaataaacataatcgaaatgtctaagagctagtaaacttagtcacagccttggtgc 23408579  T
Q  124 cttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagc 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  23408580 cttcagaaacagcatgcttggccaattctccaggaagaacaagtctgaccgcggtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagc 23408679  T
Q  224 aagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaact 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||    
T  23408680 aagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacccatcgctttgcttgagataccaatgtctgggtgaact 23408779  T
Q  324 tgtttcagtactttgaatatgtagatcttgtatgtttctaca 365  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  23408780 tgtttcagaactttgaagatgtagatcttgtatgtttctaca 23408821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 87 - 361
Target Start/End: Original strand, 23415712 - 23415986
Alignment:
Q  87 gtctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 186  Q
    ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415712 gtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaattt 23415811  T
Q  187 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcc 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  23415812 cccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgatacc 23415911  T
Q  287 catggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    |||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23415912 catggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23415986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 88 - 365
Target Start/End: Original strand, 23453376 - 23453653
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23453376 tctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagactgactgcagtctgaatttc 23453475  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  23453476 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23453575  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 365  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23453576 atggccttgcttgagataccaatgtctgggtgaacatgattcagaactttgaagatgtagatcttgtatgtttctaca 23453653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 23869006 - 23868733
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || || |||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23869006 tctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 23868907  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23868906 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagtttctcgaagatatcattgatgaaactgttcattattccc 23868807  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23868806 atggctttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23868733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 24307497 - 24307224
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || || ||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24307497 tctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaattcaccaggaagaacaagtctgacagcagtctgaatttc 24307398  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  24307397 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagctagtttctcgaagatatcattgatgaaactgttcattattccc 24307298  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||    
T  24307297 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatatagatcttgtatgtttc 24307224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 88 - 365
Target Start/End: Complemental strand, 23402348 - 23402071
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || |||||||| |||||||| ||||| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23402348 tctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23402249  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  23402248 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23402149  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctaca 365  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||||||    
T  23402148 atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttctaca 23402071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 23886101 - 23885828
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || |||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23886101 tctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaattcaccaggaagaacaagcctgactgcagtctgaatttc 23886002  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  23886001 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcatgataccc 23885902  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    ||||| ||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||||||||||    
T  23885901 atggccttgcttgagataccaatgtctgggtgaacctgcttcagaactttgaagatgtagatcttgtatgtttc 23885828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 26833009 - 26832736
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26833009 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26832910  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||    
T  26832909 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc 26832810  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26832809 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26832736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 26434298 - 26434025
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26434298 tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26434199  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |||    
T  26434198 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcgagtttctcgaagatatcattgatgaaactgttcatgataccc 26434099  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    ||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||    
T  26434098 atggctttgcttgagataccaatgtctggatgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 88 - 361
Target Start/End: Complemental strand, 26436078 - 26435805
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||||||| || |||||||| ||||| || |||||||||||    
T  26436078 tctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaattcaccgggcagaacaagcctgaccgcggtctgaatttc 26435979  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||||||||||| || |||    
T  26435978 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggaagattcttgagtgagtttctcgaagatatcattgatgaaactgttcatgataccc 26435879  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  26435878 atggctttgcttgagataccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttc 26435805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 88 - 361
Target Start/End: Original strand, 34662045 - 34662318
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttc 187  Q
    ||||||| ||||||||||| || ||||| ||||| || ||||| ||||||||||| |||||||| |||||||||||||| || || ||||||||||||||    
T  34662045 tctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaattctccaggaagaacaagcctaacagcagtctgaatttc 34662144  T
Q  188 ccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattccc 287  Q
    ||| ||||| || || ||||||||||| || |  ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |||    
T  34662145 cctcgaagttatcgtcggcttcttgttataccttgcaagtctggaagattcttgagcgagcttctcgaagatatcattgatgaaactgttcataataccc 34662244  T
Q  288 atggctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    |||||||||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||||| |||||    
T  34662245 atggctttgcttgagataccaatgtcagggtgaacttgtttcagaaccttgaagatgtagatcttgtaggtttc 34662318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 399 - 509
Target Start/End: Complemental strand, 24307186 - 24307076
Alignment:
Q  399 gcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtt 498  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||    
T  24307186 gcagcggaaccaccttcctttggtagcttctttcctgcctttggcttcttctcagcaggagccttctcggcgacggtggacttcttctcctctgcgggtt 24307087  T
Q  499 tcttctctgct 509  Q
    |||||||||||    
T  24307086 tcttctctgct 24307076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 26832701 - 26832588
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26832701 ccggcggctgaaccaccttcctttggaagcttctttccggcctttggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26832602  T
Q  496 gtttcttctctgct 509  Q
    ||||||||||||||    
T  26832601 gtttcttctctgct 26832588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 405 - 505
Target Start/End: Complemental strand, 23402031 - 23401931
Alignment:
Q  405 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 504  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23402031 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23401932  T
Q  505 c 505  Q
    |    
T  23401931 c 23401931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 23451788 - 23451920
Alignment:
Q  140 cttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattct 239  Q
    ||||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||    
T  23451788 cttggccaattcaccgggcagaacaagcctgactgcggtctgaatttcccttgaagtgattgttggcttcttgttgtagcgagcaagtctggagtattct 23451887  T
Q  240 tgagcaagcttctcgaagatatcattgatgaaa 272  Q
    ||||| |||||||| |||||||| |||||||||    
T  23451888 tgagcgagcttctcaaagatatcgttgatgaaa 23451920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 26433990 - 26433877
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26433990 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26433891  T
Q  496 gtttcttctctgct 509  Q
    ||||||||||||||    
T  26433890 gtttcttctctgct 26433877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 26435770 - 26435657
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |    
T  26435770 ccggcggctgaaccaccttcctttggaagcttctttccggccttcggcttcttctccgccggagctttctcagcgacggtggacttcttctcctctgctg 26435671  T
Q  496 gtttcttctctgct 509  Q
    ||||||||||||||    
T  26435670 gtttcttctctgct 26435657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 405 - 505
Target Start/End: Original strand, 23408861 - 23408961
Alignment:
Q  405 gaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttct 504  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  23408861 gaaccaccttcctttggtagcttctttcctgccttgggcttcttctccgccggagccttctcggcgacggtggacttcttctcctcagcgggtttcttct 23408960  T
Q  505 c 505  Q
    |    
T  23408961 c 23408961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 396 - 505
Target Start/End: Original strand, 23416018 - 23416127
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |    
T  23416018 ccggcagctgaaccaccttcctttggtagcttcttccctgcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagctg 23416117  T
Q  496 gtttcttctc 505  Q
    ||||||||||    
T  23416118 gtttcttctc 23416127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 396 - 505
Target Start/End: Complemental strand, 23868698 - 23868589
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  23868698 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctctgcgg 23868599  T
Q  496 gtttcttctc 505  Q
    ||||||||||    
T  23868598 gtttcttctc 23868589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 396 - 509
Target Start/End: Complemental strand, 23885793 - 23885680
Alignment:
Q  396 ccggcagctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgg 495  Q
    ||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| || |    
T  23885793 ccggcggctgaaccaccttcctttggaagcttctttccagccttgggcttcttctcagcaggagctttctcggcgacggtggacttcttctcctcagctg 23885694  T
Q  496 gtttcttctctgct 509  Q
    ||||||||||||||    
T  23885693 gtttcttctctgct 23885680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 402 - 506
Target Start/End: Original strand, 34662359 - 34662463
Alignment:
Q  402 gctgaaccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttct 501  Q
    |||||||| | ||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  34662359 gctgaaccgctttcctttggaagcttctttccggcctttggcttcttctctgccggagctttctcggcgacggtggatttcttctcctctgcaggtttct 34662458  T
Q  502 tctct 506  Q
    |||||    
T  34662459 tctct 34662463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 408 - 505
Target Start/End: Original strand, 23453696 - 23453793
Alignment:
Q  408 ccaccttcctttggtagcttctttcctgcctttggcttcttctccgccggagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 505  Q
    ||||||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||||||||||    
T  23453696 ccaccttccttaggaagcttctttccagcctttggcttcttctctgctggagctttctcggcaacggtggacttcttctcctcagcaggtttcttctc 23453793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 111 - 361
Target Start/End: Complemental strand, 41670651 - 41670401
Alignment:
Q  111 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 210  Q
    ||||||||||| || ||||| ||||||||||| || | |||||| || |||||||| |  || |||||||| || ||||  ||||||||||| |||||||    
T  41670651 acagccttggttccctcagagacagcatgcttagcaagttcaccggggagaacaagacgaacagcagtctgtatctcccgagaagtgattgtaggcttct 41670552  T
Q  211 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 310  Q
    ||||||| |  ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| |||||||| || ||||| || |||||||||||||||||    
T  41670551 tgttgtacctcgcaagtctggaagattcctgagcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagataccaat 41670452  T
Q  311 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
    ||| || ||||| || || || || ||||| |||||||||||||| |||||    
T  41670451 gtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttc 41670401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 91 - 364
Target Start/End: Complemental strand, 40796040 - 40795767
Alignment:
Q  91 aagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccct 190  Q
    ||||||||||||| ||||| || || ||||| || || || ||||| |||||||| | ||| || |||||||| || |  || ||||||||||| || |     
T  40796040 aagagcttgtaaatttagtgactgctttggttccctcggagacagcgtgcttggcaagttcgccgggaagaacgagacgaacagcagtctgaatctcacg 40795941  T
Q  191 tgaagtgattgttggcttcttgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatg 290  Q
     || ||||| || || ||||||||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||| || |||||     
T  40795940 agaggtgatggtaggtttcttgttgtagcgagcgagtctggatgattcctgagcgagcttctcaaagatgtcattgatgaaactgttcatgatccccata 40795841  T
Q  291 gctttgcttgagataccaatgtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttctac 364  Q
    || ||||| ||||| |||||||| || ||||| || || || || ||||| |||||||||||||| ||||||||    
T  40795840 gccttgctggagattccaatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttctac 40795767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 99 - 213
Target Start/End: Complemental strand, 33216708 - 33216594
Alignment:
Q  99 gtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtga 198  Q
    |||||||| |||||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||| |||||||||||    
T  33216708 gtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaattcaccaagaagaacaagtctgacagcagtttgaattttccttgaagtga 33216609  T
Q  199 ttgttggcttcttgt 213  Q
    |||||||||||||||    
T  33216608 ttgttggcttcttgt 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 111 - 361
Target Start/End: Complemental strand, 29391717 - 29391467
Alignment:
Q  111 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 210  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||| |||||||| |  |  || || || ||||| ||||| || || || || || ||||    
T  29391717 acagccttggttccttcggaaacagcatgtttcgccaattcaccgggaagaaccaaacgcacagccgtttgaatctccctcgacgtaatcgtcggtttct 29391618  T
Q  211 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 310  Q
    ||||||||||||| | ||| || | ||| ||||| || ||||| |||||||||||||||||||||||||| || ||||| ||||||   || ||||| ||    
T  29391617 tgttgtaacgagccaatctagaagcttcctgagcgagtttctcaaagatatcattgatgaaactgttcataatccccatagctttggaagaaatacctat 29391518  T
Q  311 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
     || || ||||| ||||| || || ||||| ||||| ||||| || |||||    
T  29391517 atcaggatgaacctgtttgagaaccttgaagatgtaaatcttataggtttc 29391467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 45576477 - 45576399
Alignment:
Q  88 tctaagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaag 166  Q
    ||||||||||||| || || |||||||| ||||| || ||||||||| ||||||| ||||||||| | || ||||||||    
T  45576477 tctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaattcatcgggcagaacaag 45576399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 33216594 - 33216558
Alignment:
Q  233 tgattcttgagcaagcttctcgaagatatcattgatg 269  Q
    ||||||||||||||||||| |||||||||||||||||    
T  33216594 tgattcttgagcaagcttcacgaagatatcattgatg 33216558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 90 - 213
Target Start/End: Complemental strand, 47317554 - 47317431
Alignment:
Q  90 taagagcttgtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttccc 189  Q
    ||||| || |||||||| |||||||| ||||| || ||||||||| |||| |||||||||||||||||||||| |||||||||  |||| ||||||||||    
T  47317554 taagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaattcaccaggaagaataagtctgacaacagtttgaatttccc 47317455  T
Q  190 ttgaagtgattgttggcttcttgt 213  Q
    ||||||||||||||||||||||||    
T  47317454 ttgaagtgattgttggcttcttgt 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 111 - 361
Target Start/End: Original strand, 40180297 - 40180547
Alignment:
Q  111 acagccttggtgccttcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagtctgaatttcccttgaagtgattgttggcttct 210  Q
    |||||||| || ||||||||||||||||| || |||||||| ||||||||||| | ||| || ||||| ||||| ||||| ||||| || || |||||||    
T  40180297 acagccttagtcccttcagaaacagcatgtttagccaattctccaggaagaaccaatctaacagcagtttgaatctccctagaagtaatcgtcggcttct 40180396  T
Q  211 tgttgtaacgagcaagtctggatgattcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaat 310  Q
    |||| || | ||| |  |  || ||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| || |||||||| | ||| ||    
T  40180397 tgttatacctagccaaacgagacgattcctgagcgagtttctcaaagatatcgttaatgaaactgttcatgattcccatagccttgcttgaaacaccgat 40180496  T
Q  311 gtctgggtgaacttgtttcagtactttgaatatgtagatcttgtatgtttc 361  Q
     || || ||||| |||||||| || ||||| ||||| |||||||| |||||    
T  40180497 atcaggatgaacctgtttcagaaccttgaagatgtatatcttgtaggtttc 40180547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 47317431 - 47317395
Alignment:
Q  233 tgattcttgagcaagcttctcgaagatatcattgatg 269  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47317431 tgattcttgagcaagcttcacgaagatatcattgatg 47317395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 178
Target Start/End: Complemental strand, 14715485 - 14715433
Alignment:
Q  126 tcagaaacagcatgcttggccaattcaccaggaagaacaagtctgactgcagt 178  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||    
T  14715485 tcagacacaacatgcttggccaattctccaggaagaacaagtctcactgcagt 14715433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 457 - 505
Target Start/End: Complemental strand, 14715420 - 14715372
Alignment:
Q  457 gagctttctcggcgacggtggacttcttctcctctgcgggtttcttctc 505  Q
    ||||||||||  |||| ||| | ||||||||||||||||||||||||||    
T  14715420 gagctttctcctcgacagtgtatttcttctcctctgcgggtttcttctc 14715372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 361
Target Start/End: Complemental strand, 29684826 - 29684701
Alignment:
Q  236 ttcttgagcaagcttctcgaagatatcattgatgaaactgttcattattcccatggctttgcttgagataccaatgtctgggtgaacttgtttcagtact 335  Q
    ||||||||| || ||||  |||||||| || | ||||||||| || | |||||| ||||| ||||| | ||||||| | || ||||||||||| || ||     
T  29684826 ttcttgagcgagtttcttaaagatatcgttcacgaaactgttaataactcccatagctttacttgaaacaccaatggcaggatgaacttgtttgagaacc 29684727  T
Q  336 ttgaatatgtagatcttgtatgtttc 361  Q
    |||||||| || |||||||| |||||    
T  29684726 ttgaatatatatatcttgtaggtttc 29684701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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