View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1497_low_8 (Length: 489)

Name: NF1497_low_8
Description: NF1497
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1497_low_8
NF1497_low_8
[»] chr8 (9 HSPs)
chr8 (15-309)||(29234090-29234384)
chr8 (373-480)||(29233920-29234026)
chr8 (87-230)||(29311026-29311169)
chr8 (87-192)||(29317581-29317686)
chr8 (88-192)||(29285754-29285858)
chr8 (87-181)||(29340553-29340647)
chr8 (92-192)||(29357386-29357486)
chr8 (138-261)||(29245619-29245742)
chr8 (139-192)||(29223778-29223831)
[»] chr2 (4 HSPs)
chr2 (79-192)||(30919551-30919664)
chr2 (79-192)||(30931038-30931151)
chr2 (84-180)||(30910108-30910204)
chr2 (80-152)||(40028468-40028537)
[»] chr3 (1 HSPs)
chr3 (86-180)||(43815048-43815142)
[»] chr5 (1 HSPs)
chr5 (84-180)||(14497536-14497632)


Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 309
Target Start/End: Complemental strand, 29234384 - 29234090
Alignment:
Q  15 gtatgtatgtacgatttttgtgattgcatacctcatgttcaatggtattgctgtccattttaatttgatttaattttcttccaaatttgctaatagagcc 114  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234384 gtatatatgtacgatttttgtgattgcatacctcatgttcaatggtattgctgtccattttaatttgatttaattttcttccaaatttgctaatagagcc 29234285  T
Q  115 ggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataagctccaaacttgatgattatcactgaaa 214  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234284 ggctcttaatatgtcttgctcttttgttcttccaattggaattgattcttcgggacatgattcaccatataagctccaaacttgatgattatcactgaaa 29234185  T
Q  215 ttacccatttggttatacccttgtggtctttttggatgaccctgtatgaatatatgcatgaaaaatacccaattataaattcgaaaggtaataac 309  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29234184 ttacccatttagttatacccttgtggtctttttggatgaccctgtatgaatatatgcatgaaaaatacccaattataaattcgaaaggtaataac 29234090  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 373 - 480
Target Start/End: Complemental strand, 29234026 - 29233920
Alignment:
Q  373 taagcagaattacaatagagttcatttaacttgattaatataaagttggaaacannnnnnnnnngtgtcatgtcagtcctttaatttatatttaaaaatg 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||          ||||||||| ||||||||||||||||||||||||||    
T  29234026 taagcagaattacaatagagttcatttaacttgattaatataaagtcggaaaca-taattttttgtgtcatgttagtcctttaatttatatttaaaaatg 29233928  T
Q  473 agaataat 480  Q
    ||||||||    
T  29233927 agaataat 29233920  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 87 - 230
Target Start/End: Complemental strand, 29311169 - 29311026
Alignment:
Q  87 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataa 186  Q
    ||||||||||||| | |||||||||| | |||||||| | |||||| |   || |||||||||||||||||| | |||| ||||||||||||||| | ||    
T  29311169 attttcttccaaaatggctaatagagtcagctcttaacaagtcttgttccgttattcttctaattggaattgttccttcaggacatgattcaccagacaa 29311070  T
Q  187 gctccaaacttgatgattatcactgaaattacccatttggttat 230  Q
     ||||| | |||| |  |||||||| |||||||  |||||||||    
T  29311069 tctccacaattgagggatatcactgtaattacctttttggttat 29311026  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 29317686 - 29317581
Alignment:
Q  87 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataa 186  Q
    |||||||||||||||   ||||||||||| ||||||| | |||||| | | || ||||||||| |||||||| | | |||||||||||||||||| | ||    
T  29317686 attttcttccaaattgagtaatagagccgactcttaacacgtcttgttctgttattcttctaactggaattgttccatcgggacatgattcaccagacaa 29317587  T
Q  187 gctcca 192  Q
    ||||||    
T  29317586 gctcca 29317581  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 29285858 - 29285754
Alignment:
Q  88 ttttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataag 187  Q
    ||||||||||||| ||||||||||| |  |||||||||||||||  |   || |||||||||||||||||| | | || ||||||||||||||| ||||     
T  29285858 ttttcttccaaatctgctaatagagtcaactcttaatatgtcttcttcggttattcttctaattggaattgttccatcaggacatgattcaccagataaa 29285759  T
Q  188 ctcca 192  Q
    |||||    
T  29285758 ctcca 29285754  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 29340647 - 29340553
Alignment:
Q  87 attttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacca 181  Q
    |||||||||||||||   |||| || ||||||||||| | |||||| |   |||||||||||| |||||||| | ||||||||||||||||||||    
T  29340647 attttcttccaaattgagtaatcgatccggctcttaacaagtcttgttcggttgttcttctaactggaattgttccttcgggacatgattcacca 29340553  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 29357486 - 29357386
Alignment:
Q  92 cttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcaccatataagctcc 191  Q
    |||||||||||||||||||||   |||||||| | |||||| | | ||  ||||||||||||||||| | |||| || |||||||||||| | |||||||    
T  29357486 cttccaaatttgctaatagagttagctcttaacaagtcttgttctgttactcttctaattggaattgttccttcagggcatgattcaccagacaagctcc 29357387  T
Q  192 a 192  Q
    |    
T  29357386 a 29357386  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 29245742 - 29245619
Alignment:
Q  138 ttgttcttctaattggaattgattcttcgggacatgattcaccatataagctccaaacttgatgattatcactgaaattacccatttggttatacccttg 237  Q
    ||||||||||||||||||||| | |||| ||||||||||||||| | || ||||| | ||||    | ||||| |||||||  |||||||||| |||||     
T  29245742 ttgttcttctaattggaattgttccttcaggacatgattcaccagacaaactccacaattgaaagatgtcactcaaattacttatttggttatgcccttt 29245643  T
Q  238 tggtctttttggatgaccctgtat 261  Q
    || ||||| |||| || |||||||    
T  29245642 tgatctttctggaggatcctgtat 29245619  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Complemental strand, 29223831 - 29223778
Alignment:
Q  139 tgttcttctaattggaattgattcttcgggacatgattcaccatataagctcca 192  Q
    ||||| |||||||| ||| | |||||| ||||||||||||||| ||||||||||    
T  29223831 tgttcgtctaattgcaatcgtttcttctggacatgattcaccagataagctcca 29223778  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 30919551 - 30919664
Alignment:
Q  79 ttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattca 178  Q
    |||||||||||||||||||||  || |||||||||  ||||||||||||||||  | ||||||||||||||||||||  ||| |||| |||||||||||     
T  30919551 ttgatttaattttcttccaaacgtgttaatagagctagctcttaatatgtcttcttcttttgttcttctaattggaacagatccttctggacatgattcg 30919650  T
Q  179 ccatataagctcca 192  Q
    ||| ||||||||||    
T  30919651 ccagataagctcca 30919664  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 30931038 - 30931151
Alignment:
Q  79 ttgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattca 178  Q
    |||| ||||||||||||||||  ||  ||||||||  ||||||||||||||||  | ||||| ||||||||||||||||| | |||| ||||||||||||    
T  30931038 ttgacttaattttcttccaaacgtgtcaatagagctagctcttaatatgtcttcttcttttgctcttctaattggaattgttccttctggacatgattca 30931137  T
Q  179 ccatataagctcca 192  Q
     |||||||||||||    
T  30931138 tcatataagctcca 30931151  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 30910108 - 30910204
Alignment:
Q  84 ttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 180  Q
    ||||||||||||||||  || ||| ||||   ||||||||||| || |  ||||||||||||||||||||||||| | |||| | ||||||||||||    
T  30910108 ttaattttcttccaaacgtgttaacagagttagctcttaatatatcctctttttttgttcttctaattggaattgttccttctgaacatgattcacc 30910204  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 40028537 - 40028468
Alignment:
Q  80 tgatttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattg 152  Q
    ||||||||||||||||||||  ||||||||||    | |||||||||||||||   |||||||||||||||||    
T  40028537 tgatttaattttcttccaaacctgctaatagatttagttcttaatatgtcttg---ttttgttcttctaattg 40028468  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 43815048 - 43815142
Alignment:
Q  86 aattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 180  Q
    ||||||||| ||||| || | | |||||| ||||||||||||||||| | | |||||||||||||||||||||   |||| ||||||||||||||    
T  43815048 aattttctttcaaatctgtttaaagagccagctcttaatatgtcttgttctgttgttcttctaattggaattgtaccttcaggacatgattcacc 43815142  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 180
Target Start/End: Original strand, 14497536 - 14497632
Alignment:
Q  84 ttaattttcttccaaatttgctaatagagccggctcttaatatgtcttgcttttttgttcttctaattggaattgattcttcgggacatgattcacc 180  Q
    ||||||||||||||||| || | ||||| |  || ||||| |||||||| | | ||||||||||||| ||||||| | |||| ||||||||||||||    
T  14497536 ttaattttcttccaaatgtgttgatagaacttgcccttaacatgtcttgttctgttgttcttctaatcggaattgttccttctggacatgattcacc 14497632  T

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