View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14980_high_2 (Length: 475)
Name: NF14980_high_2
Description: NF14980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14980_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 258 - 456
Target Start/End: Complemental strand, 32074135 - 32073937
Alignment:
| Q |
258 |
caccccgatagtcacaattagtttcaaaagagtagtcactactacttccaaaagctatatgcatttagagacaaaaagtataacgagtgtaatttccaag |
357 |
Q |
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| T |
32074135 |
caccccgatagtcacaattagtttcaaaagagtagtcactactacttccaaaagctgtatgcatttagagacaaaaagtataacgagtgtaatttccaag |
32074036 |
T |
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| Q |
358 |
caagttcaaaacatggccaaatgcatggaaataggccatggagtctcttaccaagtccactagagtacaacaacactattttcatattcttatcctagc |
456 |
Q |
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| T |
32074035 |
caagttcaaaacatggccaaatgcatggaaataggccatggagtctcttaccaagtccactagagtacaacaacattattttcatattcttatcctagc |
32073937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 32074370 - 32074207
Alignment:
| Q |
1 |
agaagatggagctatattggtaagacacgtcatttgttcttgaaaaggaaaaaattatatttgtaagagttacatcatctttaggtaatgatttttaatg |
100 |
Q |
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| T |
32074370 |
agaagatggagctatattggtaagacacgtcatttgttcttgaaaaggaaaaaattatat----------------------agataatgatttttaatg |
32074293 |
T |
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| Q |
101 |
gcaatagaaaagactagaactaggaagtgttcattgtaaaaatgaacttcatggcttcaaagtactttatttaatttgcacacttt |
186 |
Q |
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| T |
32074292 |
gcaatagaacagactagaactaggaagtgttcattgtaataatgaacttcatggcttcaaagtactttatttaatttgcacacttt |
32074207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 43471294 - 43471163
Alignment:
| Q |
17 |
ttggtaagacacgtcatttgttcttgaaaaggaaaaaattatatttgtaagagttacatcatctttaggtaatgatttttaatggcaatagaaaagacta |
116 |
Q |
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| T |
43471294 |
ttggtaagacacatcatttgttcttgcaagaggacaaataatatttttaagagttacctcttccttagacaatgatttttcatagcatta-aaaaaatta |
43471196 |
T |
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| Q |
117 |
-gaactaggaagtgttcattgtaaaaatgaact |
148 |
Q |
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| T |
43471195 |
tgaactaggaattgttcatcgtaatgatgaact |
43471163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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