View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14980_low_1 (Length: 522)

Name: NF14980_low_1
Description: NF14980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14980_low_1
NF14980_low_1
[»] chr4 (11 HSPs)
chr4 (116-491)||(5812373-5812751)
chr4 (116-304)||(37793380-37793568)
chr4 (116-306)||(5915659-5915849)
chr4 (116-237)||(22729774-22729894)
chr4 (116-236)||(22756796-22756915)
chr4 (116-236)||(1012360-1012481)
chr4 (116-234)||(9743654-9743772)
chr4 (117-158)||(54995664-54995705)
chr4 (116-158)||(2708015-2708057)
chr4 (116-158)||(17612476-17612518)
chr4 (116-158)||(33036066-33036108)
[»] chr8 (7 HSPs)
chr8 (116-305)||(1879090-1879279)
chr8 (116-305)||(1835249-1835438)
chr8 (116-306)||(35735845-35736035)
chr8 (116-158)||(3038548-3038590)
chr8 (116-158)||(4108778-4108820)
chr8 (116-158)||(6267369-6267411)
chr8 (116-156)||(23176650-23176690)
[»] chr1 (11 HSPs)
chr1 (116-297)||(21263909-21264090)
chr1 (116-306)||(421386-421577)
chr1 (116-234)||(16132541-16132659)
chr1 (116-236)||(28012130-28012251)
chr1 (116-234)||(10758164-10758282)
chr1 (116-250)||(15964150-15964284)
chr1 (116-158)||(27118472-27118514)
chr1 (116-161)||(13876783-13876828)
chr1 (116-158)||(17695871-17695913)
chr1 (116-158)||(31804948-31804990)
chr1 (256-304)||(47279159-47279207)
[»] chr5 (13 HSPs)
chr5 (121-306)||(25513769-25513954)
chr5 (116-295)||(13887246-13887425)
chr5 (116-306)||(8777277-8777467)
chr5 (116-304)||(26411293-26411481)
chr5 (116-229)||(22616564-22616677)
chr5 (117-232)||(10053291-10053406)
chr5 (116-154)||(25521707-25521745)
chr5 (116-158)||(33163657-33163699)
chr5 (116-234)||(36055738-36055856)
chr5 (116-212)||(21320839-21320935)
chr5 (116-236)||(25653648-25653768)
chr5 (116-158)||(41417443-41417485)
chr5 (116-193)||(21266126-21266203)
[»] chr3 (19 HSPs)
chr3 (116-290)||(29895874-29896048)
chr3 (116-306)||(48155077-48155267)
chr3 (116-303)||(54606703-54606890)
chr3 (23-94)||(47870398-47870469)
chr3 (163-295)||(13006908-13007040)
chr3 (117-234)||(40640496-40640616)
chr3 (152-260)||(11018400-11018508)
chr3 (116-158)||(26000674-26000716)
chr3 (169-297)||(5124675-5124803)
chr3 (116-234)||(49359492-49359610)
chr3 (116-158)||(32180615-32180657)
chr3 (116-158)||(38392492-38392534)
chr3 (116-158)||(7568583-7568625)
chr3 (116-158)||(7758287-7758329)
chr3 (116-158)||(44880932-44880974)
chr3 (116-158)||(47930531-47930573)
chr3 (116-157)||(42665372-42665412)
chr3 (259-304)||(45174494-45174539)
chr3 (117-161)||(11018556-11018600)
[»] chr2 (10 HSPs)
chr2 (116-297)||(7553357-7553538)
chr2 (120-297)||(6348721-6348900)
chr2 (116-283)||(32651854-32652021)
chr2 (117-264)||(40913164-40913306)
chr2 (121-297)||(58029-58204)
chr2 (116-234)||(41643938-41644056)
chr2 (116-235)||(34441787-34441904)
chr2 (118-158)||(38250000-38250040)
chr2 (116-235)||(15650913-15651032)
chr2 (117-158)||(18059227-18059268)
[»] chr6 (6 HSPs)
chr6 (116-306)||(4488446-4488636)
chr6 (116-297)||(25440965-25441146)
chr6 (117-308)||(19631745-19631932)
chr6 (116-158)||(11084018-11084060)
chr6 (116-158)||(26301789-26301831)
chr6 (116-158)||(34993973-34994015)
[»] chr7 (9 HSPs)
chr7 (116-291)||(47190068-47190246)
chr7 (116-234)||(37854160-37854276)
chr7 (116-234)||(22955176-22955294)
chr7 (116-197)||(8758393-8758474)
chr7 (116-158)||(5781658-5781700)
chr7 (116-158)||(19786426-19786468)
chr7 (116-234)||(4618619-4618737)
chr7 (116-158)||(49002366-49002408)
chr7 (346-378)||(29670371-29670403)
[»] scaffold0312 (1 HSPs)
scaffold0312 (116-306)||(8995-9185)
[»] scaffold0262 (1 HSPs)
scaffold0262 (117-158)||(12031-12072)


Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 116 - 491
Target Start/End: Complemental strand, 5812751 - 5812373
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||| || ||||||||||||||||    
T  5812751 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaataaagttgtacatcatatgagcaaatgtacaatacgcaatataatttgatgttac 5812652  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttccttgtttctaaa 315  Q
    ||| ||||||||||||||| ||||||||||| ||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||||    
T  5812651 atgcattaaatacacaaatgcattatgattgatcattctaatgacttcagcaaaaaaaaatttctaacaacttcaccatagatttttccttgtttttaaa 5812552  T
Q  316 aaaccaatgaataatagattaatgcatgtatcataataaatatacatcaaaattataacatttgattctgttttaaaatggatcttaaatgtgatctgat 415  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5812551 aaaccaatgaataatagattaatacatgtatcataataaatatacatcaaaattataacatttgattctgttttaaaatggatcttaaatgtgatctgat 5812452  T
Q  416 taattttaatataa---atatcccaagaaaacatcgaataaaaaattaattttggtttattttaatgaatttgaaatta 491  Q
    ||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5812451 taattttaatataaaatatatcccaagaaaacatcgaataaaaaattaattttggtttattttaatgaatttgaaatta 5812373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 37793568 - 37793380
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||| ||||||||||||  ||    
T  37793568 gtttaattttaatttaatcaaagacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgagac 37793469  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcc 304  Q
    ||  |||||| |||||| | ||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||  |||| ||||||    
T  37793468 attcattaaacacacaactgcattatgattgatcattctaatgacttcaccaaaaaagtcattctaacaacttcacagtagaattttcc 37793380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 5915659 - 5915849
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| | ||| |||||||||||||| | || || ||||||||||  |    
T  5915659 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatataagcaaatgtacaatgcgcactaaaatttgatgtggc 5915758  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||| |||||||||||| ||| |||||||||| ||||| ||||||||||| || |||| | ||| |||| ||||||||||||| ||| ||||    
T  5915759 atgcattaaatacacagatatattatgattgatcattctaatgacttcaccagaaaaatcattttaacgacttcaccatagaatttccctt 5915849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 22729894 - 22729774
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||| |||||  |||||| ||||||||||| || || |||| | ||| | ||||||||||||| |||||||| ||||||||||||||  |    
T  22729894 gtttaattttgattcaatcag-gacacagttgcaataagttaagatatagtggcacaccatatgagcaaatgtgcaatacaccgtataatttgatgtggc 22729796  T
Q  216 atgtattaaatacacaaataca 237  Q
    ||| ||||||||||||||||||    
T  22729795 atgcattaaatacacaaataca 22729774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 22756796 - 22756915
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||| |||||  ||| |||||| |||||||||| || |||| | ||   |||||||||||||| |||||||| ||||||||||||||  |    
T  22756796 gtttaattttgattcaatcag-gacgcaattggaataagtaaagatatagtggcacgctgtatgagcaaatgtgcaatacaccgtataatttgatgtggc 22756894  T
Q  216 atgtattaaatacacaaatac 236  Q
    ||| |||||||||||||||||    
T  22756895 atgcattaaatacacaaatac 22756915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 1012481 - 1012360
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaa-ttgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgtta 214  Q
    ||||||||||||||||||||  ||||||| |||||||||||||| || || |   ||| | |||| |||||||| ||||||||  |||||| ||| || |    
T  1012481 gtttaattttgatttaatcagggacacaaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgcaatacaccatataatctgacgtga 1012382  T
Q  215 catgtattaaatacacaaatac 236  Q
    |||| |||||||||||||||||    
T  1012381 catggattaaatacacaaatac 1012360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 9743772 - 9743654
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||||||  ||| |||||||||||||||| || || |   |||   ||||   |||||| ||||||||  |||||| ||| |||||    
T  9743772 gtttaattttgatttaatcaagaacataattgcaataagtaaagatttaatgaaacactttatggaaaaatgtgcaatacaccatataatatgacgttac 9743673  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  9743672 atggattaaatacacaaat 9743654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 54995664 - 54995705
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  54995664 tttaattttgatttaatcagggacacaattgcaataagtaaa 54995705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 2708057 - 2708015
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  ||| |||||||||||||||||    
T  2708057 gtttaattttgatttaatcagggactcaattgcaataagtaaa 2708015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 17612518 - 17612476
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||| | |||| ||||||||||||||||    
T  17612518 gtttaattttgatttaatctaggacataattgcaataagtaaa 17612476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 33036066 - 33036108
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  ||| |||||||||||||||||    
T  33036066 gtttaattttgatttaatcagagactcaattgcaataagtaaa 33036108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 116 - 305
Target Start/End: Original strand, 1879090 - 1879279
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |||| |||||   ||||| ||||||||||||||||| ||||||||||||| ||    
T  1879090 gtttaattttgatttaatcaaggacacatttgcaataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgac 1879189  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcct 305  Q
    ||  ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  1879190 attcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 1879279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 116 - 305
Target Start/End: Original strand, 1835249 - 1835438
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||| |||| |||||||||||| |||| |||||   ||||| ||||||||||||||||| ||||||||||||| ||    
T  1835249 gtttaattttgatttaatcaaggacacatttgcgataagtaaaaatatagtggtacacaatatgaacaaatgtacaatacacactataatttgatgtgac 1835348  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcct 305  Q
    ||  ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  1835349 attcattaaatacacaaatgcattatgattggtcattctaatgacttcaccaaaaaagtcattctaacaacttcaccatagaattttcct 1835438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 35735845 - 35736035
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||| |||||||||  |||||||||| |||| ||||| || |||| | ||| | ||||||||||||| ||||||||  |||||||| | |  ||    
T  35735845 gtttaatttttatttaatcag-gacacaattgtaataggtaaagatatagtggcacaccttatgagcaaatgtgcaatacaccatataatttaacgggac 35735943  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatag-atttttcctt 306  Q
    |   ||||||||||||||| |   |||||| ||| | | | | |||||| ||||||||| |||||||  |||||||||||| ||||||||||    
T  35735944 acacattaaatacacaaatgctcaatgattcgtcgtatgattaacttcaccaaaaaagtcattctaatgacttcaccatagaatttttcctt 35736035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 3038590 - 3038548
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  3038590 gtttaattttgatttaatcagggacacaattgcaataagtaaa 3038548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 4108778 - 4108820
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  4108778 gtttaattttgatttaatcagggacacaattgcaataagtaaa 4108820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 6267369 - 6267411
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||| |||| ||||||||||||||||    
T  6267369 gtttaattttgatttaatcaaggacataattgcaataagtaaa 6267411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 23176650 - 23176690
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagta 156  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  23176650 gtttaattttgatttaatcagggacacaattgcaataagta 23176690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 116 - 297
Target Start/End: Original strand, 21263909 - 21264090
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||| ||||||||||||| ||    
T  21263909 gtttaattttgatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacattataatttgatgtgac 21264008  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccataga 297  Q
    ||  |||||| |||||| | ||||||||||||||||| ||||||||||| |||||||||  || ||||||||||||||||||    
T  21264009 attcattaaacacacaactgcattatgattggtcattctaatgacttcaccaaaaaagtctttataacaacttcaccataga 21264090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 116 - 306
Target Start/End: Complemental strand, 421577 - 421386
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||||||||||| |||||| || || | | ||||||||| || |||||| ||||| || |||||||||||  | ||    
T  421577 gtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgac 421478  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagc-aaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||  |||||||||||||||     ||||||| ||||| | ||||||||||| |||||||| ||||| | ||||||| |||||| ||||||||    
T  421477 atacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaaagtcattctcataacttcatcatagaattttcctt 421386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 16132659 - 16132541
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  ||||||||||||||||||||| || || |   |||   |||| |||||||| |||||||| ||||||| | | ||| |    
T  16132659 gtttaattttgatttaatcagagacacaattgcaataagtaaagatataatgacacacattatgtgcaaatgtgcaatacaccgtataatctcacgttgc 16132560  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  16132559 atggattaaatacacaaat 16132541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 28012251 - 28012130
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaata--agtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgtt 213  Q
    ||||||||||||||||||||  || ||||||  ||||  |||||| || |||| | ||||| || |||||||||| ||||||||  |||||||| ||||     
T  28012251 gtttaattttgatttaatcag-gatacaattataatataagtaaagatatagtagcacatcttaggagcaaatgtgcaatacaccatataatttaatgtg 28012153  T
Q  214 acatgtattaaatacacaaatac 236  Q
    ||||| |||||||||||||||||    
T  28012152 acatgcattaaatacacaaatac 28012130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 10758164 - 10758282
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||| |  |||||||||||||||||||||||| || |   |||   |||  |||||||| ||||||||  |||||| ||||||  |    
T  10758164 gtttaattttgatttaattagggacacaattgcaataagtaaaaatataatgacacacactataggcaaatgttcaatacaccatataatctgatgtggc 10758263  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  10758264 atgaattaaatacacaaat 10758282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 15964284 - 15964150
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  ||||||||||  || |||||  || || |   ||||| ||||  ||||||| ||||||||  |||||||||| || ||    
T  15964284 gtttaattttgatttaatcagggacacaattgatatcagtaagtatataatgacacatcttatggacaaatgtgcaatacactatataatttgacgtgac 15964185  T
Q  216 atgtattaaatacacaaatacattatgattggtca 250  Q
    ||  ||||||||||||||| | | |||||||||||    
T  15964184 atagattaaatacacaaatgcttaatgattggtca 15964150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 27118514 - 27118472
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  27118514 gtttaattttgatttaatcagggacacaattgcaataagtaaa 27118472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 13876783 - 13876828
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaat 161  Q
    ||||||||||||||||||||| || ||||||||||||| |||||||    
T  13876783 gtttaattttgatttaatcaaggatacaattgcaataactaaaaat 13876828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 17695871 - 17695913
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||| ||| ||||| |||||||||||    
T  17695871 gtttaattttgatttaatcaaagactcaattacaataagtaaa 17695913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 31804948 - 31804990
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||||| |||||||||| ||| |||||||    
T  31804948 gtttaattttgatttaatcagtgacacaatttcaagaagtaaa 31804990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 47279207 - 47279159
Alignment:
Q  256 atgacttcagcaaaaaagttattctaacaacttcaccatagatttttcc 304  Q
    ||||||||| ||||||||| ||||| |  ||||||||||||||||||||    
T  47279207 atgacttcaccaaaaaagtcattctcatgacttcaccatagatttttcc 47279159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 121 - 306
Target Start/End: Complemental strand, 25513954 - 25513769
Alignment:
Q  121 attttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttacatgta 220  Q
    |||||||||||||||| || ||||||||||||||||||||| |||| ||||| | |||||||||||||||||| | ||||| |||||||||| || ||||    
T  25513954 attttgatttaatcaaggagacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtgacttgta 25513855  T
Q  221 ttaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || |||| | ||| |||| ||||||||||||| ||||||||    
T  25513854 ttaaatacacaaatgcattatgattggtcattctaatgacttcaccagaaaaatcattttaacgacttcaccatagaattttcctt 25513769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 116 - 295
Target Start/End: Complemental strand, 13887425 - 13887246
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| || | ||||| | |||||||||||||||||| | ||||| |||||||||| ||    
T  13887425 gtttaattttgatttaatcaaggacacaattgcaataagtaaaaatataatggtacaccatatgagcaaatgtacaatgcgcagtaaaatttgatgtgac 13887326  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccata 295  Q
    ||| |||||||||||||||| |||||||||||||| |||||| |||||| || |||| | ||| |||| |||||||||||    
T  13887325 atgcattaaatacacaaataaattatgattggtcaatttaatcacttcaccagaaaaatcattttaacgacttcaccata 13887246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 8777277 - 8777467
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||  || |||||||||||||||||||||||| |||| ||||| | |||||||||||||||||| |||| || ||||||||||  |    
T  8777277 gtttaattttgatttaacgaaggacacaattgcaataagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcacactaaaatttgatgtggc 8777376  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||| |||||||||||||||  |||||||||||||||| ||||||||| | ||||||||| ||| || | |||||||| |||| ||| ||||    
T  8777377 atgcattaaatacacaaatgtattatgattggtcattctaatgactttaccaaaaaagtcattttagcgacttcaccgtagaatttccctt 8777467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 26411481 - 26411293
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||| |  || |||||||||||||||||| || |||| | | |  |||||||||||||||||||||||  |||||||||| || ||    
T  26411481 gtttaattttgatttaattagggatacaattgcaataagtaaatatatagtggcatactgtatgagcaaatgtacaatacaccatataatttgacgtgac 26411382  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcc 304  Q
    |||||||||||||| |||||    ||||||||||||| ||||||||||| ||||||| | |||||||  ||||||||||||| ||||||    
T  26411381 atgtattaaatacataaatattcaatgattggtcattctaatgacttcaccaaaaaaatcattctaatgacttcaccatagaattttcc 26411293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 116 - 229
Target Start/End: Complemental strand, 22616677 - 22616564
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  ||||||||||||||||||||| || || |   ||| | |||| |||||||| ||||||||  |||||| ||| || ||    
T  22616677 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtccaatacaccatataatatgacgtgac 22616578  T
Q  216 atgtattaaataca 229  Q
    ||| ||||||||||    
T  22616577 atggattaaataca 22616564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 10053406 - 10053291
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttaca 216  Q
    |||||||||||||||||||  ||| ||||||||||||||||| || || |   ||| | ||||||||||||| ||||||||  ||||||  || || |||    
T  10053406 tttaattttgatttaatcagggactcaattgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacacgatataatccgacgtaaca 10053307  T
Q  217 tgtattaaatacacaa 232  Q
    || |||||||||||||    
T  10053306 tggattaaatacacaa 10053291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 25521707 - 25521745
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataag 154  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  25521707 gtttaattttgatttaatcaaggacacaattgcaataag 25521745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 33163699 - 33163657
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  33163699 gtttaattttgatttaatcagggacacaattgcaataagtaaa 33163657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 36055738 - 36055856
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||||   |||||||||| |||||||||| || || |   ||| | ||||||||||||| ||||||||  | |||| |||||  ||    
T  36055738 gtttaattttgatttaatcggggacacaattgtaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatgtaatctgatgcgac 36055837  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| ||||||| |||||||    
T  36055838 atgaattaaattcacaaat 36055856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 212
Target Start/End: Complemental strand, 21320935 - 21320839
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgt 212  Q
    ||||||||||||||||||||  |||||||||| |||||||||| || || |  |||||| |||  |||||| | ||||||||  |||||| ||||||    
T  21320935 gtttaattttgatttaatcagagacacaattgtaataagtaaagatataatgatacatcttatatgcaaatatgcaatacaccatataatctgatgt 21320839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 25653768 - 25653648
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  || | | |||||||||||||| || || |   ||| | ||||||||||||| ||||||||  || ||| ||| || |     
T  25653768 gtttaattttgatttaatcagggaaatagttgcaataagtaaagatataatgacacaccttatgagcaaatgtgcaatacaccatacaatctgacgtgat 25653669  T
Q  216 atgtattaaatacacaaatac 236  Q
    ||| |||||||||||||||||    
T  25653668 atgaattaaatacacaaatac 25653648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 41417443 - 41417485
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||||   |||||||||||||||||||||    
T  41417443 gtttaattttgatttaatctgggacacaattgcaataagtaaa 41417485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 21266203 - 21266126
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaat 193  Q
    |||||| |||||||||||||  ||| ||||||||||||||||| || || |  |||| | ||||||||||||| ||||    
T  21266203 gtttaaatttgatttaatcagagactcaattgcaataagtaaagatataatgatacaccttatgagcaaatgtgcaat 21266126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 116 - 290
Target Start/End: Complemental strand, 29896048 - 29895874
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| ||| ||||| ||||  || ||||| |||| ||||| |||||||||||||||||| ||||| |||||||||||||| ||    
T  29896048 gtttaattttgatttaatcaaggacccaattccaatgggttaaaatatagtggtacaccgtatgagcaaatgtacagtacacggtataatttgatgtgac 29895949  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttca 290  Q
    ||| |||||||||||| ||  |||||||||||||||| |||| |||||| ||||||||| |||||||||||||||    
T  29895948 atgcattaaatacacagatgtattatgattggtcattctaataacttcaccaaaaaagtcattctaacaacttca 29895874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 48155077 - 48155267
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| | |||||||||||||||||| | || || |||||||||| ||    
T  48155077 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtgac 48155176  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||| |||||||||||| ||  |||||||| ||||||| ||||||||||| ||||||||| ||| |||| |||||||| |||| ||| ||||    
T  48155177 atgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaatttccctt 48155267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 116 - 303
Target Start/End: Complemental strand, 54606890 - 54606703
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||| |||||||||| | |||||||||||||||||||||| |||  | ||| |||||||| |||||| |||||||| |||| ||||||  | ||    
T  54606890 gtttaattttaatttaatcaagggcacaattgcaataagtaaaaatatagcagcacaccgtatgagtaaatgtgcaatacaccgtatgatttgacatgac 54606791  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttc 303  Q
    ||  |||||||||||||||     ||||||||||| | ||||||||||| ||||||||| ||| ||| || || |||||||| |||||    
T  54606790 atacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaacaaaaaagtcattttaataattttaccatagaattttc 54606703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 47870469 - 47870398
Alignment:
Q  23 tgatgaagatgatagggataaaggaagttggaacgttttacccggttttgatgcaaacgattttttatttac 94  Q
    ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||||||    
T  47870469 tgatgaagatgatagggataaaggaagttggaatgttttaccagattttgatgcaaatgattttttatttac 47870398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 295
Target Start/End: Complemental strand, 13007040 - 13006908
Alignment:
Q  163 tagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttacatgtattaaatacacaaatacattatgattggtcattttaatgactt 262  Q
    |||| ||||| | |||||||||||||||||| | || || ||||||||||  |||| |||||||||||||||  |||||||||||||| | |||| ||||    
T  13007040 tagtggtacaccatatgagcaaatgtacaatgcgcaataaaatttgatgtggcatgcattaaatacacaaatgaattatgattggtcaatctaataactt 13006941  T
Q  263 cagcaaaaaagttattctaacaacttcaccata 295  Q
    ||  |||||||| ||| |||| |||||||||||    
T  13006940 cactaaaaaagtcattttaacgacttcaccata 13006908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 234
Target Start/End: Original strand, 40640496 - 40640616
Alignment:
Q  117 tttaattttgatttaatcaatgacacaatt---gcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgtt 213  Q
    |||||||||||||||||||| |||||||||   ||||||||||||||| || |   ||||| |||| |||||||| ||||||||  |||||| ||| ||     
T  40640496 tttaattttgatttaatcaaggacacaattgcagcaataagtaaaaatataatgacacatcttatgggcaaatgtgcaatacaccatataatatgacgtg 40640595  T
Q  214 acatgtattaaatacacaaat 234  Q
    ||||| |||||||||||||||    
T  40640596 acatggattaaatacacaaat 40640616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 11018508 - 11018400
Alignment:
Q  152 aagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttacatgtattaaatacacaaatacattatgattggtcat 251  Q
    |||||||||| |||| | ||| |||||||||||||||||| |||||| ||||||| || || | |||||||||||||| ||||  |  ||||||||||||    
T  11018508 aagtaaaaatatagtggcacaccgtatgagcaaatgtacagtacacaatataattggacgtgatatgtattaaatacataaatgtaaaatgattggtcat 11018409  T
Q  252 tttaatgac 260  Q
    | |||||||    
T  11018408 tctaatgac 11018400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 26000716 - 26000674
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  26000716 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 26000674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 169 - 297
Target Start/End: Complemental strand, 5124803 - 5124675
Alignment:
Q  169 tacatcgtatgagcaaatgtacaatacacagtataatttgatgttacatgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaa 268  Q
    |||| |||||||| |||||| |||||||| |||||||||||  | ||||  |||||||||||||||     ||||||||||| | ||||||||||| |||    
T  5124803 tacaccgtatgagtaaatgtgcaatacaccgtataatttgacatgacatacattaaatacacaaatgttcaatgattggtcaatctaatgacttcaccaa 5124704  T
Q  269 aaaagttattctaacaacttcaccataga 297  Q
    |||||| ||| |||  | |||||||||||    
T  5124703 aaaagtcattttaatgatttcaccataga 5124675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 49359492 - 49359610
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  |||||||||||| |||||||| || || |   ||| | ||||||||||||| |||||||   |||||| ||| ||  |    
T  49359492 gtttaattttgatttaatcagggacacaattgcattaagtaaagatataatgacacaccttatgagcaaatgtgcaatacatcatataatatgacgtgtc 49359591  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  49359592 atggattaaatacacaaat 49359610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 32180615 - 32180657
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  32180615 gtttaattttgatttaatcagggacacaattgcaataagtaaa 32180657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 38392492 - 38392534
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  38392492 gtttaattttgatttaatcagggacacaattgcaataagtaaa 38392534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 7568583 - 7568625
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||| ||||||||||    
T  7568583 gtttaattttgatttaatcagagacacaattgtaataagtaaa 7568625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 7758287 - 7758329
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  7758287 gtttaattttgatttaattagggacacaattgcaataagtaaa 7758329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 44880974 - 44880932
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||| ||||||||||    
T  44880974 gtttaattttgatttaatcagggacacaattgtaataagtaaa 44880932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 47930531 - 47930573
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||| |  |||||||||||||||||||||    
T  47930531 gtttaattttgatttaatgagggacacaattgcaataagtaaa 47930573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 157
Target Start/End: Original strand, 42665372 - 42665412
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaa 157  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  42665372 gtttaattttgatttaatc-atgacacaattgcaacaagtaa 42665412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 45174539 - 45174494
Alignment:
Q  259 acttcagcaaaaaagttattctaacaacttcaccatagatttttcc 304  Q
    |||||| ||||||||||||||| |||||||||||||| | ||||||    
T  45174539 acttcaccaaaaaagttattctcacaacttcaccataaaattttcc 45174494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 11018600 - 11018556
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaaaat 161  Q
    ||||||||||||||||| |  || |||||||||||||||||||||    
T  11018600 tttaattttgatttaattagggatacaattgcaataagtaaaaat 11018556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 7553538 - 7553357
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||  |||| | |||||  ||| ||||||| |||| |||||||| ||||  |    
T  7553538 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatatagtgatacaccatatgaataaaagtacaatgcacaatataatttaatgtggc 7553439  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccataga 297  Q
    ||  |||||||||||||||  |||||||||||||||| ||||||||| | ||||||||| ||| ||||||||||||||||||    
T  7553438 attcattaaatacacaaatgtattatgattggtcattctaatgactttaccaaaaaagtcattttaacaacttcaccataga 7553357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 120 - 297
Target Start/End: Complemental strand, 6348900 - 6348721
Alignment:
Q  120 aattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacaca--gtataatttgatgttacat 217  Q
    |||||||||||||| || ||| |||||||||||||||||| | || | ||||| | ||||| ||||||||||||| |||  ||| ||||||||||  |||    
T  6348900 aattttgatttaattaaggacccaattgcaataagtaaaactataatggtacaccatatgaacaaatgtacaatatacatagtaaaatttgatgtgtcat 6348801  T
Q  218 gtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccataga 297  Q
    | ||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||    
T  6348800 gcattaaatacacaaatgcattatgattggtcattctaatgacttcatcaaaaaagtcattttaacaacttcaccataga 6348721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 116 - 283
Target Start/End: Complemental strand, 32652021 - 32651854
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| | |||||||||||||||||| | || || |||||||||| ||    
T  32652021 gtttaattttgatttaatcaaggacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtgac 32651922  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaac 283  Q
    ||| |||||||||||| ||  |||||||||| ||||| ||||||||||| || |||||||||| ||||    
T  32651921 atgcattaaatacacagatgtattatgattgatcattctaatgacttcaccagaaaagttattttaac 32651854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 117 - 264
Target Start/End: Original strand, 40913164 - 40913306
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttaca 216  Q
    |||||||||||||||||||| |||||||||||||||| ||||||| |||| ||||| | |||||||||||||||||| ||||||| ||||||| | |||     
T  40913164 tttaattttgatttaatcaaggacacaattgcaataaataaaaatatagtggtacaccatatgagcaaatgtacaatgcacagtaaaatttgacg-tac- 40913261  T
Q  217 tgtattaaatacacaaatacattatgattggtcattttaatgacttca 264  Q
       |||||||||||||||  |||||||||||||||||||| |||||||    
T  40913262 ---attaaatacacaaatgaattatgattggtcattttaacgacttca 40913306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 121 - 297
Target Start/End: Complemental strand, 58204 - 58029
Alignment:
Q  121 attttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttacatgta 220  Q
    ||||| |||||||||  |||||||||||||||||||||||| | || | ||| ||||||| ||||||| ||||||||  ||||||||||| | ||||| |    
T  58204 attttaatttaatcag-gacacaattgcaataagtaaaaatattgtggcacaccgtatgaacaaatgtgcaatacaccatataatttgatctgacatgaa 58106  T
Q  221 ttaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccataga 297  Q
    ||||||||| | ||     ||||||||||||| | ||||||||| ||||||||| ||||| | || |||||||||||    
T  58105 ttaaatacagatatgttaaatgattggtcattctcatgacttcatcaaaaaagtcattctcataatttcaccataga 58029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 116 - 234
Target Start/End: Complemental strand, 41644056 - 41643938
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  || |||||||||||||||||| || || |   ||| | ||||| ||||||| ||||||||  |||||| ||| || ||    
T  41644056 gtttaattttgatttaatcagggatacaattgcaataagtaaagatataatgacacaccttatgatcaaatgtgcaatacaccatataatctgacgtgac 41643957  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  41643956 atgaattaaatacacaaat 41643938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 34441787 - 34441904
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  ||||||||||||||||||||| || ||     ||||| |||| |||||||| ||||||||  |||||  ||| || ||    
T  34441787 gtttaattttgatttaatcagggacacaattgcaataagtaaagatataacgacacatcttatgggcaaatgtgcaatacaccatataa--tgacgtgac 34441884  T
Q  216 atgtattaaatacacaaata 235  Q
    ||| ||||||||||||||||    
T  34441885 atgaattaaatacacaaata 34441904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 38250000 - 38250040
Alignment:
Q  118 ttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  38250000 ttaattttgatttaatcagggacacaattgcaataagtaaa 38250040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 15651032 - 15650913
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||   |||||||||||||||||||| || || |   ||| | |||| ||||||||  |||||||  |||||| | | || |     
T  15651032 gtttaattttgatttaatcaggaacacaattgcaataagtaaagatataatgacacaccttatgggcaaatgtgaaatacaccatataatcttacgtgat 15650933  T
Q  216 atgtattaaatacacaaata 235  Q
    ||| ||||||||||||||||    
T  15650932 atggattaaatacacaaata 15650913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 18059227 - 18059268
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||| || ||||||| |||||||||||||||||||||    
T  18059227 tttaattttaatctaatcaaggacacaattgcaataagtaaa 18059268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 4488446 - 4488636
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||||||  |||||||||||| |||||||||| |||| ||||| | |||||||||||||||||| | || || |||||||||| ||    
T  4488446 gtttaattttgatttaatcaagaacacaattgcaacaagtaaaaatatagtggtacaccatatgagcaaatgtacaatgcgcactaaaatttgatgtgac 4488545  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||| |||||||||||| ||  |||||||| ||||||| ||||||||||| ||||||||| ||| |||| |||||||| |||| ||| ||||    
T  4488546 atgcattaaatacacagatgtattatgatcggtcattctaatgacttcaccaaaaaagtcattttaacgacttcaccgtagaatttccctt 4488636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 116 - 297
Target Start/End: Complemental strand, 25441146 - 25440965
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| |||| ||||| | ||| |||||||||||||| | || || ||||||||||  |    
T  25441146 gtttaattttaatttaatcaaggacacaattgcaataagtaaaaatatagtggtacaccatataagcaaatgtacaatgcgcactaaaatttgatgtggc 25441047  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccataga 297  Q
    ||| |||||||||||| ||  ||||| |||||| ||| ||||||||||| || |||||| ||| |||| |||||||||||||    
T  25441046 atgaattaaatacacagatgtattataattggtaattctaatgacttcaccagaaaagtcattttaacgacttcaccataga 25440965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 117 - 308
Target Start/End: Complemental strand, 19631932 - 19631745
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttaca 216  Q
    |||||||||||||||||||  ||||| ||||||||||||||| || || |   ||| | |||  |||||||| ||||||||  |||||| | | || |||    
T  19631932 tttaattttgatttaatcagagacacgattgcaataagtaaagatataatgaaacaccttataggcaaatgtgcaatacaccatataatctaacgtgaca 19631833  T
Q  217 tgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttccttgt 308  Q
    || |||||||||||||||     |||||||||||||    | |||||| || |||||| ||||| |  ||||||||||||| ||||||||||    
T  19631832 tggattaaatacacaaatgttcaatgattggtcatt----taacttcaccagaaaagtcattcttatgacttcaccatagaattttccttgt 19631745  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 11084018 - 11084060
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  11084018 gtttaattttgatttaatcagagacacaattgcaataagtaaa 11084060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 26301789 - 26301831
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||  |||||||||||||||||||||    
T  26301789 gtttaattttgatttaatcagggacacaattgcaataagtaaa 26301831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 34994015 - 34993973
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||| |||||||||| ||||||||||    
T  34994015 gtttaattttgatttaatcaaggacacaattgtaataagtaaa 34993973  T

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Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 116 - 291
Target Start/End: Complemental strand, 47190246 - 47190068
Alignment:
Q  116 gtttaattttgatttaat---caatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgt 212  Q
    ||||||||||||||||||   ||| || ||||||||||||||||||||| |||| ||||| | ||||| ||||||||||||||||| |||||||||||||    
T  47190246 gtttaattttgatttaataatcaaagatacaattgcaataagtaaaaatatagtggtacaccatatgaacaaatgtacaatacacactataatttgatgt 47190147  T
Q  213 tacatgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcac 291  Q
     ||||  |||||| |||||| | ||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||    
T  47190146 gacattcattaaacacacaactgcattatgattggtcattctaataactttaccaaaaaagtcattctaacaacttcac 47190068  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 37854160 - 37854276
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||  |||||||||||||| |||||| || ||    |||  | ||||||||||||| ||||||||  |||||| ||| || ||    
T  37854160 gtttaattttgatttaatcagggacacaattgcaatcagtaaagatataaacatac--cttatgagcaaatgtgcaatacaccatataatgtgacgtgac 37854257  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  37854258 atggattaaatacacaaat 37854276  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 22955176 - 22955294
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||| |||||||||| |  ||||||||||||||||||||| ||  | |   | | | ||||||||||||| ||||||||  |||||||||| || ||    
T  22955176 gtttaatgttgatttaataagggacacaattgcaataagtaaagatacaatgacataccttatgagcaaatgtgcaatacaccatataatttgacgtgac 22955275  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  22955276 atggattaaatacacaaat 22955294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 8758474 - 8758393
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacac 197  Q
    |||||||||| ||||||||||   |||||||||||||||||||||| |||| | ||| |||||||  |||||| ||||||||    
T  8758474 gtttaattttaatttaatcaagagcacaattgcaataagtaaaaatatagtagcacaccgtatgaataaatgtgcaatacac 8758393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 5781700 - 5781658
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||| |||||||||||||||| ||||    
T  5781700 gtttaattttgatttaatcaaggacacaattgcaataaataaa 5781658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 19786468 - 19786426
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  19786468 gtttaattttgatttaatcaaggactcaattgcaataagtaaa 19786426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 4618619 - 4618737
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    |||||||||||||||||| |   | ||||||||||||| |||| || || |   ||||  ||||| ||||||| ||||||||  |||||||||| |  ||    
T  4618619 gtttaattttgatttaatgaggtatacaattgcaataaataaatatataatgacacattttatgaacaaatgtgcaatacaccatataatttgaagcgac 4618718  T
Q  216 atgtattaaatacacaaat 234  Q
    ||| |||||||||||||||    
T  4618719 atgaattaaatacacaaat 4618737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 49002408 - 49002366
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    ||||||||||||||||||||   ||||||||||||||||||||    
T  49002408 gtttaattttgatttaatcagacacacaattgcaataagtaaa 49002366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 378
Target Start/End: Original strand, 29670371 - 29670403
Alignment:
Q  346 tcataataaatatacatcaaaattataacattt 378  Q
    ||||||||||| |||||||||||||||||||||    
T  29670371 tcataataaatttacatcaaaattataacattt 29670403  T

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Target: scaffold0312 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 116 - 306
Target Start/End: Original strand, 8995 - 9185
Alignment:
Q  116 gtttaattttgatttaatcaatgacacaattgcaataagtaaaaatgtagttgtacatcgtatgagcaaatgtacaatacacagtataatttgatgttac 215  Q
    ||||||||||||||||||||| |||||||||||||| |||||| || || | | ||||||||| || |||||| ||||| || |||||||||||  | ||    
T  8995 gtttaattttgatttaatcaaggacacaattgcaattagtaaagatataatggaacatcgtataagtaaatgtgcaataaactgtataatttgacatgac 9094  T
Q  216 atgtattaaatacacaaatacattatgattggtcattttaatgacttcagcaaaaaagttattctaacaacttcaccatagatttttcctt 306  Q
    ||  |||||||||||||||     ||||||| ||||| | ||||||||||||||||||| ||||| | ||||||| |||||| ||||||||    
T  9095 atacattaaatacacaaatgttcaatgattgatcattctcatgacttcagcaaaaaagtcattctcataacttcatcatagaattttcctt 9185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Original strand, 12031 - 12072
Alignment:
Q  117 tttaattttgatttaatcaatgacacaattgcaataagtaaa 158  Q
    |||||||||||||||||||   ||||||||||||||||||||    
T  12031 tttaattttgatttaatcaggaacacaattgcaataagtaaa 12072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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