View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14980_low_3 (Length: 465)
Name: NF14980_low_3
Description: NF14980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14980_low_3 |
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| [»] scaffold0156 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 20 - 447
Target Start/End: Complemental strand, 3364623 - 3364195
Alignment:
| Q |
20 |
tctctcgtggatctgatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattaggaccccgccata |
119 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364623 |
tctctcgcggatctaatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattaggaccccgccata |
3364524 |
T |
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| Q |
120 |
tgaaattacgggttgtttgataagtgatccaattctcttacgacttgaactaatcaattgtcgatataatcaaaatagtttattgattatctttttagtg |
219 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364523 |
tgaaattacaggttgtttgataagtgatccaattctcttacgacttgaactaatcaattgtcgatataatcaaaatagtttattgattatctttttagtg |
3364424 |
T |
|
| Q |
220 |
ttttcaagtttacaatataaatttttgtcatgcatcgatcaatataaaataattacaatgtcaatcactcaaaatttggcataccattgaaagtttagct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3364423 |
ttttcaagtttacaatataaatttttgtcatgcatcgatcaatataaaataattacaatgtcaatcactcaaaatttggcataccattgaaagtttagct |
3364324 |
T |
|
| Q |
320 |
ttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgact-nnnnnnngaacataagattatgatttcaggagaataaaaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3364323 |
ttaagtcgtgataaccttaaatgtcataaaccgtaatatataaaatgacgatttgactaaaaaaaagaacataagattatgatttcaggagaataaaaat |
3364224 |
T |
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| Q |
419 |
aactatgaagagttttccacattgtaaat |
447 |
Q |
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| T |
3364223 |
aactatgaagagttttccacattgtaaat |
3364195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 29 - 140
Target Start/End: Original strand, 39227549 - 39227660
Alignment:
| Q |
29 |
gatctgatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattaggaccccgccatatgaaattac |
128 |
Q |
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| T |
39227549 |
gatctaatgcccaggccgccaagattcttcggttttgcaattttcttccatcctaccaaatgaattcccttatcattatgacccctccatatgaagttcc |
39227648 |
T |
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| Q |
129 |
gggttgtttgat |
140 |
Q |
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| T |
39227649 |
gagttgtctgat |
39227660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 27781006 - 27781115
Alignment:
| Q |
20 |
tctctcgtggatctgatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattaggaccccgccata |
119 |
Q |
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||||||| |||||| || ||||| ||||||| |||||||||||||||||||| ||||| ||||| | ||||||||| |||||||||| |||| ||| | |
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| T |
27781006 |
tctctcgcggatctaattccaaggccgccaagcttctttggttttgcaatttttttccaaccaaccagatgaattcccttatcattagtacccttccaaa |
27781105 |
T |
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| Q |
120 |
tgaaattacg |
129 |
Q |
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|||||||||| |
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| T |
27781106 |
tgaaattacg |
27781115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 22663702 - 22663786
Alignment:
| Q |
29 |
gatctgatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattaggacccc |
113 |
Q |
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||||| ||||| || ||||||| ||||| ||||||||||||||||| || || || ||||||||||| ||||||||| |||||| |
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| T |
22663702 |
gatctaatgcccaggccgccaagattcttcggttttgcaattttctttcatcctaccaaatgaattcccttatcattatgacccc |
22663786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0156 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0156
Description:
Target: scaffold0156; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 17497 - 17576
Alignment:
| Q |
29 |
gatctgatgccaagaccgccaatgttctttggttttgcaattttcttccagccaactaaatgaattccattatcattagg |
108 |
Q |
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||||| ||||| | |||||||||||| |||||| | |||||||| ||||| ||||| ||||| ||||| || |||||||| |
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| T |
17497 |
gatcttatgcctaaaccgccaatgttttttggtctagcaattttattccaaccaaccaaatggattcctttgtcattagg |
17576 |
T |
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