View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14980_low_4 (Length: 422)
Name: NF14980_low_4
Description: NF14980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14980_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 47116987 - 47116595
Alignment:
| Q |
1 |
ttgcttaccttgctttgtgatttcatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116987 |
ttgcttaccttgctttgtgatttgatcgttaaaaggtatgaatatttatctccttgaattgaaactaaagatataaaagaaattggttattgaatatctt |
47116888 |
T |
|
| Q |
101 |
tgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagnnnnnnngagatatcataaggaaatgaaataacaagggtatgag |
200 |
Q |
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| T |
47116887 |
tgataaaatataactattgtaattacctgagaagcgatgaaacaaaacaatgtcagaaaaaaagagatatcataaggaaatgaaataacaagggtatgag |
47116788 |
T |
|
| Q |
201 |
gaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaaattttctttgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47116787 |
gaagcttggagtggtgtccatctattgtggaaggattggggattcgttcattaacataacatcattgaatgagatgtatgacgtggaacttttctttgta |
47116688 |
T |
|
| Q |
301 |
actgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47116687 |
actgtctccccgaactttcagtaattaataccacaattagcacaaataatttctttcattttctctttccttaccagttttccaccaaataat |
47116595 |
T |
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