View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14980_low_6 (Length: 239)
Name: NF14980_low_6
Description: NF14980
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14980_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38129284 - 38129068
Alignment:
| Q |
1 |
aatcctttcagcccatgtaatctgaacaaatattcctttcaacacattcctatctaacatagtagtaacagtaaacaatacaataggatgttcttaatat |
100 |
Q |
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| T |
38129284 |
aatcctttcagcccacgtaatctgaacaaacattcctttcaacacattcctatctaacatagtagtaacagtaaacaatacaataggatgttcttaatat |
38129185 |
T |
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| Q |
101 |
ggcatatcagnnnnnnnnnnnnnnnnnnncaatttcccttctaacaaatgagatgtatcttatctttcccctgcaaataatgcataataaatccaggatt |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
38129184 |
ggcatatcag------ttttaaaaaaaaacaatttcccttctaacaaatgagatgtatcttatctttcccctgcaaatgatgcataataaatccaggatt |
38129091 |
T |
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| Q |
201 |
ggagactggaactcggccaaatc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38129090 |
ggagactggaactcggccaaatc |
38129068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 130 - 223
Target Start/End: Original strand, 38309160 - 38309251
Alignment:
| Q |
130 |
caatttcccttctaacaaatgagatgtatcttatctttcccctgcaaataatgcataataaatccaggattggagactggaactcggccaaatc |
223 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
38309160 |
caatttcccttctaacaaatgagatgtttctaatctttcccctgcaaataa--cgaaataaatccaggattggagactggaactcggccaaatc |
38309251 |
T |
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