View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_high_23 (Length: 282)

Name: NF14981_high_23
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_high_23
NF14981_high_23
[»] chr1 (34 HSPs)
chr1 (30-276)||(31117724-31117971)
chr1 (42-210)||(21516661-21516827)
chr1 (30-100)||(22593635-22593706)
chr1 (30-187)||(32359108-32359263)
chr1 (54-172)||(42747548-42747664)
chr1 (30-88)||(20004000-20004058)
chr1 (41-105)||(35272623-35272687)
chr1 (42-96)||(10518245-10518299)
chr1 (44-100)||(15188583-15188639)
chr1 (42-125)||(28736208-28736289)
chr1 (30-74)||(32602836-32602880)
chr1 (53-205)||(35058506-35058649)
chr1 (33-88)||(38322111-38322166)
chr1 (51-105)||(1415742-1415796)
chr1 (42-100)||(20791972-20792030)
chr1 (51-93)||(25365856-25365898)
chr1 (34-100)||(37131504-37131570)
chr1 (34-91)||(2061026-2061083)
chr1 (51-91)||(33076702-33076742)
chr1 (44-96)||(46315642-46315694)
chr1 (51-91)||(46742554-46742594)
chr1 (42-105)||(35926674-35926737)
chr1 (51-98)||(47326545-47326592)
chr1 (51-93)||(2937433-2937475)
chr1 (51-96)||(1190104-1190149)
chr1 (168-205)||(7583335-7583372)
chr1 (51-96)||(11823677-11823722)
chr1 (44-77)||(15942491-15942524)
chr1 (51-96)||(28314815-28314860)
chr1 (51-96)||(28955516-28955561)
chr1 (51-96)||(30358167-30358212)
chr1 (51-96)||(38624161-38624206)
chr1 (57-105)||(5951867-5951915)
chr1 (42-94)||(38785780-38785832)
[»] chr4 (32 HSPs)
chr4 (30-204)||(24418234-24418406)
chr4 (30-82)||(20988809-20988861)
chr4 (51-126)||(39276342-39276415)
chr4 (39-105)||(3535174-3535240)
chr4 (30-131)||(21501599-21501697)
chr4 (30-100)||(52831466-52831536)
chr4 (30-105)||(31736137-31736212)
chr4 (53-186)||(23051682-23051813)
chr4 (39-105)||(24474108-24474174)
chr4 (51-105)||(50570373-50570427)
chr4 (30-105)||(41963380-41963455)
chr4 (54-131)||(2733406-2733480)
chr4 (33-126)||(26026665-26026756)
chr4 (39-105)||(44555710-44555776)
chr4 (42-134)||(13615223-13615313)
chr4 (30-86)||(47789498-47789554)
chr4 (51-105)||(5291517-5291571)
chr4 (42-76)||(12637615-12637649)
chr4 (51-96)||(6238281-6238326)
chr4 (51-96)||(19801019-19801064)
chr4 (51-96)||(19801824-19801869)
chr4 (41-102)||(33889355-33889416)
chr4 (51-96)||(36181331-36181376)
chr4 (51-96)||(37114395-37114440)
chr4 (51-96)||(49335152-49335197)
chr4 (51-88)||(50792377-50792414)
chr4 (41-105)||(20435433-20435496)
chr4 (51-91)||(25687084-25687124)
chr4 (212-271)||(37561497-37561557)
chr4 (30-74)||(44820133-44820177)
chr4 (41-77)||(52327336-52327372)
chr4 (51-91)||(54683695-54683735)
[»] chr2 (21 HSPs)
chr2 (30-210)||(40909816-40909994)
chr2 (30-210)||(44984329-44984507)
chr2 (42-105)||(31062950-31063013)
chr2 (30-212)||(42139286-42139465)
chr2 (42-105)||(27679079-27679142)
chr2 (30-76)||(15804440-15804486)
chr2 (55-148)||(38808956-38809047)
chr2 (51-96)||(5774186-5774231)
chr2 (51-96)||(39241122-39241167)
chr2 (30-118)||(44810054-44810140)
chr2 (53-99)||(12359877-12359923)
chr2 (51-96)||(1875994-1876039)
chr2 (37-86)||(5330507-5330556)
chr2 (51-96)||(7454625-7454670)
chr2 (51-96)||(8875766-8875811)
chr2 (51-96)||(12160875-12160920)
chr2 (51-96)||(14958213-14958258)
chr2 (51-96)||(34245339-34245384)
chr2 (51-96)||(36936034-36936079)
chr2 (51-96)||(38324331-38324376)
chr2 (39-75)||(42034452-42034488)
[»] chr5 (30 HSPs)
chr5 (30-105)||(1621545-1621620)
chr5 (31-105)||(16869942-16870016)
chr5 (42-131)||(32882703-32882790)
chr5 (33-105)||(9004827-9004899)
chr5 (42-124)||(34639774-34639854)
chr5 (51-105)||(20369102-20369156)
chr5 (42-125)||(4283088-4283169)
chr5 (39-106)||(2941931-2941998)
chr5 (39-86)||(31812082-31812129)
chr5 (39-98)||(41892908-41892967)
chr5 (33-91)||(15120889-15120947)
chr5 (51-96)||(10815156-10815201)
chr5 (30-125)||(28363422-28363515)
chr5 (52-96)||(23590732-23590776)
chr5 (42-105)||(6462402-6462465)
chr5 (54-100)||(20364399-20364445)
chr5 (54-96)||(27812965-27813007)
chr5 (51-96)||(6789575-6789620)
chr5 (51-96)||(15498738-15498783)
chr5 (51-96)||(24171458-24171503)
chr5 (51-96)||(29525282-29525327)
chr5 (51-96)||(36761155-36761200)
chr5 (51-96)||(37530706-37530751)
chr5 (51-96)||(41734230-41734275)
chr5 (51-96)||(42422902-42422947)
chr5 (51-96)||(42709404-42709449)
chr5 (44-96)||(16218262-16218314)
chr5 (53-105)||(34640009-34640061)
chr5 (30-70)||(34640078-34640118)
chr5 (51-91)||(35766657-35766697)
[»] chr3 (24 HSPs)
chr3 (29-205)||(37083755-37083930)
chr3 (41-105)||(36879053-36879117)
chr3 (30-96)||(32117833-32117899)
chr3 (42-99)||(38684772-38684829)
chr3 (41-105)||(32109521-32109585)
chr3 (39-125)||(32326151-32326235)
chr3 (41-131)||(43822510-43822598)
chr3 (42-212)||(9198195-9198363)
chr3 (30-105)||(32582460-32582535)
chr3 (30-172)||(32645687-32645826)
chr3 (30-100)||(20873194-20873264)
chr3 (51-93)||(55226391-55226433)
chr3 (51-88)||(12122842-12122879)
chr3 (39-91)||(11041989-11042041)
chr3 (42-105)||(44539132-44539195)
chr3 (42-131)||(1384160-1384247)
chr3 (51-96)||(2557863-2557908)
chr3 (43-96)||(8879457-8879510)
chr3 (54-91)||(9558824-9558861)
chr3 (57-102)||(29296786-29296831)
chr3 (51-96)||(34435936-34435981)
chr3 (51-96)||(41991645-41991690)
chr3 (51-88)||(48747505-48747542)
chr3 (51-96)||(54463417-54463462)
[»] chr7 (27 HSPs)
chr7 (32-105)||(28175581-28175654)
chr7 (51-96)||(6243959-6244004)
chr7 (30-105)||(883747-883822)
chr7 (30-105)||(1243076-1243151)
chr7 (39-93)||(42967760-42967814)
chr7 (54-131)||(44235513-44235588)
chr7 (51-96)||(42328125-42328170)
chr7 (51-91)||(3370547-3370587)
chr7 (53-96)||(31226834-31226877)
chr7 (53-99)||(18654160-18654206)
chr7 (54-88)||(44818822-44818856)
chr7 (54-99)||(18654709-18654754)
chr7 (42-102)||(24432772-24432830)
chr7 (73-130)||(24847078-24847135)
chr7 (51-96)||(27826802-27826847)
chr7 (51-96)||(29994177-29994222)
chr7 (51-88)||(33982276-33982313)
chr7 (51-88)||(38224726-38224763)
chr7 (51-96)||(42328984-42329029)
chr7 (51-88)||(44104537-44104574)
chr7 (51-96)||(46672599-46672644)
chr7 (33-89)||(2525172-2525227)
chr7 (51-91)||(4060450-4060490)
chr7 (53-105)||(15568759-15568811)
chr7 (51-91)||(25696131-25696171)
chr7 (53-105)||(37868987-37869039)
chr7 (51-91)||(46349845-46349885)
[»] scaffold0040 (1 HSPs)
scaffold0040 (30-125)||(49895-49988)
[»] chr8 (18 HSPs)
chr8 (41-170)||(14243110-14243237)
chr8 (41-172)||(41470027-41470156)
chr8 (41-105)||(27316671-27316735)
chr8 (39-172)||(28444780-28444911)
chr8 (30-105)||(3346232-3346307)
chr8 (39-91)||(37740626-37740678)
chr8 (30-105)||(25019621-25019696)
chr8 (51-96)||(14911858-14911903)
chr8 (51-96)||(25100176-25100221)
chr8 (51-96)||(25100339-25100384)
chr8 (51-96)||(36859321-36859366)
chr8 (51-96)||(40529594-40529639)
chr8 (51-96)||(43800730-43800775)
chr8 (52-88)||(2595231-2595267)
chr8 (42-102)||(18892296-18892356)
chr8 (39-91)||(21367217-21367268)
chr8 (42-125)||(24523835-24523916)
chr8 (41-105)||(43408553-43408616)
[»] chr6 (8 HSPs)
chr6 (33-88)||(4912383-4912438)
chr6 (51-96)||(20645751-20645796)
chr6 (51-96)||(12130574-12130619)
chr6 (51-96)||(21860327-21860372)
chr6 (51-96)||(24119200-24119245)
chr6 (32-88)||(724585-724641)
chr6 (43-122)||(3341097-3341174)
chr6 (53-105)||(9618505-9618557)
[»] scaffold0004 (1 HSPs)
scaffold0004 (30-89)||(339023-339081)
[»] scaffold0010 (1 HSPs)
scaffold0010 (39-105)||(166598-166662)
[»] scaffold0330 (1 HSPs)
scaffold0330 (51-96)||(7084-7129)
[»] scaffold0009 (1 HSPs)
scaffold0009 (51-88)||(94365-94402)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 276
Target Start/End: Original strand, 31117724 - 31117971
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||    
T  31117724 gataaaaattgataggctataagctacttgaattatcttatcaaaaaaagctataagctcataaaattaagttatattaacttgtgagaaaatgacaatt 31117823  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggcccttaaatttattattcaa-cc 228  Q
    || || |||||| ||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||  |||| ||    
T  31117824 accaaacaggtctttttcagtcatacgagattataagcaataagccataagctcaaatatgtgtcttaccaaacaggcccttaaatttattgctcaaccc 31117923  T
Q  229 acttttatgtaaatgtatccgaacaaaaaccacttcacattcatctca 276  Q
    ||||||  ||||||||||| ||||| ||||||||| |||||| |||||    
T  31117924 acttttgcgtaaatgtatctgaacagaaaccactttacattcttctca 31117971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 210
Target Start/End: Original strand, 21516661 - 21516827
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtc 141  Q
    |||||||| || ||||||| || |||||  |||||| ||||||||||||| ||| |||||||||  |||| |||| |||||||||||||| || || |||    
T  21516661 taagctataagatacttgattttgcttaataaaaaacgctataagctcatcaaattaagttata--agctcgtgaaaaaatgacaattaccaaacatgtc 21516758  T
Q  142 cttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggccct 210  Q
     |||| ||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  21516759 ttttttagtcatacgagcttataagctataagccataagctcaaatatgtgtcttaccaaacagaccct 21516827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 22593635 - 22593706
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatc-aaaaaatgctataagctcataaaaataag 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |||||||||||    
T  22593635 gataaaaaatgataagctataagctacttgaattagcttatcgaaaaactgctataagctgataaaaataag 22593706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 32359263 - 32359108
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||| || ||||||||  | |||||||||||||||||||||||  ||| ||||||||| |||||||| ||||  |||| |||  ||||||||| ||    
T  32359263 gataaaaagtgctaagctataggttacttgaattagcttatcaaaaatcgctgtaagctcatgaaaataagctata--agctcgtgtaaaaatgacagtt 32359166  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaat 187  Q
     | || | | || |||| | ||||||||| ||||||||||||||||||  ||||||||    
T  32359165 gcgaaacggatcttttttaatcatacgagcttataagctataaaccattagctcaaat 32359108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 172
Target Start/End: Complemental strand, 42747664 - 42747548
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtccttttcagtcat 153  Q
    ||||||||||||||||| ||||||  |||||||||||||||| |||| ||||  |||||||||| |||||||| ||||| |   ||||  ||| | ||||    
T  42747664 tacttgaattagcttataaaaaaacactataagctcataaaattaagctata--agcttgtgagtaaatgacagttacttaatgggtctattttaatcat 42747567  T
Q  154 acgagattataagctataa 172  Q
    ||||| |||||||||||||    
T  42747566 acgagcttataagctataa 42747548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Complemental strand, 20004058 - 20004000
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagct 88  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  20004058 gataaaaggtgataagctataagctacttgaattagcttatcaaaaaacgctataagct 20004000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 35272623 - 35272687
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||| || ||||||| ||||||||||||||||| | |||||||||||||||||||||| ||||    
T  35272623 ataagccataagctactggaattagcttatcaaaacaagctataagctcataaaaataagctata 35272687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 10518299 - 10518245
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||||| |||||||| |||||||||||||||||||| |||||||| |||||||    
T  10518299 taagctataagctacttaaattagcttatcaaaaaatgttataagctaataaaaa 10518245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 15188583 - 15188639
Alignment:
Q  44 agctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    |||||| |||||||||||||||||  |||| |||||||||||||| |||||||||||    
T  15188583 agctataagctacttgaattagctcgtcaagaaatgctataagcttataaaaataag 15188639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 28736208 - 28736289
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    ||||||||  |||||||||||||||||||| |||||||||||||| |  |||||||||| | ||  ||||||||| ||||||||    
T  28736208 taagctatacgctacttgaattagcttatctaaaaatgctataagttggtaaaaataagctgta--agcttgtgaaaaaatgac 28736289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 32602880 - 32602836
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaa 74  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||    
T  32602880 gataaaaattgataagctataagctatttgaattagcttatcaaa 32602836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 205
Target Start/End: Complemental strand, 35058649 - 35058506
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtccttttcagtca 152  Q
    |||||||||||||||||  |||||  ||||||||| | |||||||||| ||||  |||| ||||| |||||||  |||| || | |||| | || |||||    
T  35058649 ctacttgaattagcttactaaaaaccgctataagcccgtaaaaataagctata--agctcgtgagcaaatgactgttaccaaacgggtcatctttagtca 35058552  T
Q  153 tacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacag 205  Q
    |||||| ||||||| |||||       ||||||| ||||||||||||||||||    
T  35058551 tacgagcttataagttataa-------gctcaaacatgtgtcttaccaaacag 35058506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 38322111 - 38322166
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||||||||| ||||||||||| | ||||||||||||| || |||||||    
T  38322111 aaaaattgataagctataagctacttgaagtggcttatcaaaaaacgcaataagct 38322166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 1415796 - 1415742
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||||||||||||||||||| |||||||  | ||||||||||| ||||    
T  1415796 agctacttgaattagcttatcaaaaaacgctataaattaataaaaataagctata 1415742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 20791972 - 20792030
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    |||||||| ||||||||||||||||||||||||||   |||| | ||||||||||||||    
T  20791972 taagctataagctacttgaattagcttatcaaaaaccactatgaactcataaaaataag 20792030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 25365898 - 25365856
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataa 93  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  25365898 agctacttgaattagcttttcaaaaaacgctataagctcataa 25365856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 37131504 - 37131570
Alignment:
Q  34 aaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    |||| ||||||||||| |||||||||||||||||||||||||  || | |||| |||| ||||||||    
T  37131504 aaaagtgataagctataagctacttgaattagcttatcaaaagctgttgtaagttcatgaaaataag 37131570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 2061026 - 2061083
Alignment:
Q  34 aaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    |||| ||||||||| | ||||||||||||||||||||||||| |||  ||||||||||    
T  2061026 aaaaatgataagctttaagctacttgaattagcttatcaaaacatgtcataagctcat 2061083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 33076742 - 33076702
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    |||||||||||||||||| |||||||||| |||||||||||    
T  33076742 agctacttgaattagcttttcaaaaaatgttataagctcat 33076702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 46315642 - 46315694
Alignment:
Q  44 agctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||| ||||||||||| ||||||||||||||| | ||||||||||| ||||    
T  46315642 agctataagctacttgaaatagcttatcaaaaaacgttataagctcatgaaaa 46315694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 46742594 - 46742554
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  46742594 agctacttgaaatagcttttcaaaaaatgctataagctcat 46742554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 35926674 - 35926737
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| |||||||||||| ||||||||||||||  ||| |||||  |||||||||| ||||    
T  35926674 taagctataagctacttgaatcagcttatcaaaaaacactacaagctagtaaaaataagctata 35926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 47326545 - 47326592
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaata 98  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||||    
T  47326545 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaata 47326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 2937475 - 2937433
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataa 93  Q
    ||||||||||| |||||| | ||||||||||||||||||||||    
T  2937475 agctacttgaaatagctttttaaaaaatgctataagctcataa 2937433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 1190104 - 1190149
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  1190104 agctacttgaaatagcttttcaaaaaatgttataagctcatgaaaa 1190149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 7583372 - 7583335
Alignment:
Q  168 tataaaccataggctcaaatatgtgtcttaccaaacag 205  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  7583372 tataaaccacaagctcaaatatgtgtcttaccaaacag 7583335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 11823722 - 11823677
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  11823722 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 11823677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Original strand, 15942491 - 15942524
Alignment:
Q  44 agctattagctacttgaattagcttatcaaaaaa 77  Q
    |||||| |||||||||||||||||||||||||||    
T  15942491 agctataagctacttgaattagcttatcaaaaaa 15942524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 28314815 - 28314860
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  28314815 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 28314860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 28955516 - 28955561
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  28955516 agctacttgaaatagcttttcaaaaaatgttataagctcatgaaaa 28955561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 30358212 - 30358167
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  30358212 agctacttgaaatagcttttcaaaaaatgttataagctcatgaaaa 30358167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 38624206 - 38624161
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  38624206 agctacttgaaatagcttttcaaaaaaagctataagctcatgaaaa 38624161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 105
Target Start/End: Original strand, 5951867 - 5951915
Alignment:
Q  57 ttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||||  |||  |||||||||||||||||||||| ||||    
T  5951867 ttgaattagcttatctcaaaccgctataagctcataaaaataagctata 5951915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 94
Target Start/End: Complemental strand, 38785832 - 38785780
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaa 94  Q
    |||| ||| ||||| ||||||||||||||||||  |||||||||||| |||||    
T  38785832 taagttataagctatttgaattagcttatcaaattatgctataagctaataaa 38785780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 204
Target Start/End: Original strand, 24418234 - 24418406
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||  ||||||||  |||| ||||||||  ||||||||||||    
T  24418234 gataaaaaatgataagctataagctacttgaattagcttatcaaaaaccgctataagctcaagaaaataag--atataagcttgtgtaaaaatgacaatt 24418331  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaaca 204  Q
    |  || ||||||  ||| | ||||| ||| | ||||| ||||| ||||| |||||| | | ||| ||||||||||    
T  24418332 agcaaacaggtctcttttaatcatatgagctgataaggtataagccataagctcaattttatgttttaccaaaca 24418406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 20988809 - 20988861
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgcta 82  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  20988809 gataaaaaatgataagctataagctacttgaattagcttatcaaaaaatgcta 20988861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 126
Target Start/End: Complemental strand, 39276415 - 39276342
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgaca 126  Q
    ||||||||||||||||||||||||||| | ||||||||  |||||||||||||||  |||| ||||||||||||||    
T  39276415 agctacttgaattagcttatcaaaaaacgttataagctagtaaaaataagttata--agctcgtgagaaaatgaca 39276342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 3535240 - 3535174
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||| |  |||||||||| ||||    
T  3535240 tgataagctataagctacttgaattagcttatcaaaaaacgctataagttagtaaaaataagctata 3535174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 21501697 - 21501599
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||  ||||| |||  |||||||||| ||||  |||| |||||||| ||||| ||    
T  21501697 gataaaaatt-ataagctataagctacttgaattagcttatcaaaaaacactatatgctagtaaaaataagctata--agctcgtgagaaagtgacagtt 21501601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 52831536 - 52831466
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||    ||||||||||| ||||||||    
T  52831536 gataaaaaatgataagctataagctacttgaattagcttatcaaaaacctttataagctcatgaaaataag 52831466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 31736137 - 31736212
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| | ||||||||| | |||||||||||||||||| |||||  | ||||||||||| |||||||||||||    
T  31736137 gataaaaaattataagctataaactacttgaattagcttataaaaaatcgttataagctcatgaaaataagttata 31736212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 23051682 - 23051813
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtccttttcagtca 152  Q
    |||||||||||||||||||| |||  ||||||| |||||||||||||| | ||  |||| |||||||| ||||  |||| || ||||||||||| |||||    
T  23051682 ctacttgaattagcttatcacaaaccgctataaactcataaaaataagctgta--agctcgtgagaaagtgactgttaccaaacaggtcctttttagtca 23051779  T
Q  153 tacgagattataagctataaaccataggctcaaa 186  Q
     | | | |||||||  |||||| ||| |||||||    
T  23051780 aatgggcttataagacataaactataagctcaaa 23051813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 24474174 - 24474108
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||| |||||||||||||||||||| |||||  ||||||| ||||| |||||||| ||||    
T  24474174 tgataagctataagctacttgaattagcttataaaaaaccgctataaactcatgaaaataagatata 24474108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 50570373 - 50570427
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||    
T  50570373 agctacttgaagtagcttatcaaaaaatgttataatctaataaaaataagttata 50570427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 41963380 - 41963455
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||| ||| ||||||||||| || ||||||||||||||||||| |||  |||||||| ||||| | ||||||||||    
T  41963380 gatacaaagtgataagctataagttacttgaattagcttatcacaaatcgctataagttcatagatataagttata 41963455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 2733406 - 2733480
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattac 131  Q
    ||||||||||||||||||||||| || | ||||||||| |||||||||||||  |||| |||  ||||||||||||||    
T  2733406 tacttgaattagcttatcaaaaactgat-taagctcattaaaataagttata--agctggtgtaaaaatgacaattac 2733480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 126
Target Start/End: Complemental strand, 26026756 - 26026665
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgaca 126  Q
    ||||| ||||||||| | |||| |||||||||| ||||||||| | ||||||||||  |||||||||||  ||  ||||||||||| |||||||    
T  26026756 aaaaaatgataagctctaagctccttgaattagtttatcaaaacacgctataagctagtaaaaataagtcgta--agcttgtgagataatgaca 26026665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 44555710 - 44555776
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||| ||||||||| ||||||||||||||||| |||| |||||  |||||| ||| ||||    
T  44555710 tgataagctataagctacttggattagcttatcaaaaaacgctaaaagctagtaaaaagaagctata 44555776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 134
Target Start/End: Original strand, 13615223 - 13615313
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaa 134  Q
    |||||||| |||||||| |||||||||||| |||||  | ||||  ||||||||||||| ||||  | || |||||||||||||| |||||||    
T  13615223 taagctataagctacttaaattagcttatcgaaaaacacaataatatcataaaaataaggtata--aactcgtgagaaaatgacagttactaa 13615313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 47789498 - 47789554
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataag 86  Q
    |||||| | ||||||||||| ||||||||||||||||||||| ||||  ||||||||    
T  47789498 gataaatagtgataagctataagctacttgaattagcttatcgaaaaccgctataag 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 5291571 - 5291517
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||| ||||||| |||||| ||||  |||||||||||||| ||||    
T  5291571 agctacttgaattaacttatcacaaaatgatatacactcataaaaataagatata 5291517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 12637649 - 12637615
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaa 76  Q
    |||||||||||||||||||||||| ||||||||||    
T  12637649 taagctattagctacttgaattagtttatcaaaaa 12637615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 6238326 - 6238281
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  6238326 agctacttgaaatagcttttcaaaaaatgttataagctcatgaaaa 6238281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 19801064 - 19801019
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  19801064 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 19801019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 19801824 - 19801869
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  19801824 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 19801869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 33889416 - 33889355
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagtt 102  Q
    ||||| ||| |||||||||||||| ||||| |||||||| |||| ||| || ||||||||||    
T  33889416 ataagttataagctacttgaattaacttataaaaaaatgttataggctaatgaaaataagtt 33889355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 36181331 - 36181376
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  36181331 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36181376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 37114395 - 37114440
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  37114395 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 37114440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 49335152 - 49335197
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  49335152 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 49335197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 50792377 - 50792414
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  50792377 agctacttgaaatagcttctcaaaaaatgctataagct 50792414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 20435496 - 20435433
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||| |||| |||||||| ||||||||||||| ||| | |||||| ||||| |||||||||||||    
T  20435496 ataaactataagctacttaaattagcttatcacaaactactataaactcat-aaaataagttata 20435433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 25687124 - 25687084
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  25687124 agctacttgaaatagcttttcaaaaaacgctataagctcat 25687084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 271
Target Start/End: Original strand, 37561497 - 37561557
Alignment:
Q  212 aaatttattattcaacc-acttttatgtaaatgtatccgaacaaaaaccacttcacattca 271  Q
    ||||||||  ||||||| |||||||||||||||||| | |||| ||||||| |||||||||    
T  37561497 aaatttatcgttcaacctacttttatgtaaatgtattcaaacataaaccacgtcacattca 37561557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 44820177 - 44820133
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaa 74  Q
    |||||||||||||||  ||| |||||||||||||| |||||||||    
T  44820177 gataaaaattgataaattataagctacttgaattaacttatcaaa 44820133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 52327372 - 52327336
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaa 77  Q
    ||||||| | |||||||||||||||||||||||||||    
T  52327372 ataagctttaagctacttgaattagcttatcaaaaaa 52327336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 54683735 - 54683695
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    |||||||||||||||||| |||||||| | |||||||||||    
T  54683735 agctacttgaattagcttttcaaaaaacgttataagctcat 54683695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 40909994 - 40909816
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||| |||||| |||| | ||||||||||||||||||||||||| | ||||||||||| |||||||||||||  |||||||    | |||||| ||    
T  40909994 gataaaaagtgataacctataaactacttgaattagcttatcaaaaaacgttataagctcatgaaaataagttata--agcttgtcttcagatgacagtt 40909897  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggccct 210  Q
    || || | |||  |||| | |||||| || ||||||||||||| ||||| |||||| | | |||||||| |||||| ||||    
T  40909896 accaaactggtattttttaatcatacaagcttataagctataagccatacgctcaactttatgtcttactaaacagaccct 40909816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 210
Target Start/End: Original strand, 44984329 - 44984507
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||| | ||||||||| | |||||||||||||  |||||||    | |||||| ||    
T  44984329 gataaaaagtgataacctataagctacttgaattagcttatcaaaaaacgttataagctcgtgaaaataagttata--agcttgtcttcagatgacagtt 44984426  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggccct 210  Q
    || || | |||  |||| | |||||| || |||||||||| || ||||| |||||| | | |||||||| |||||| ||||    
T  44984427 accaaactggtattttttaatcatacaagcttataagctacaagccatacgctcaactttatgtcttactaaacagaccct 44984507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 31063013 - 31062950
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| ||||||||||| ||||||||||||||  ||||||||||| | |||||||||||||    
T  31063013 taagctataagctacttgaaatagcttatcaaaaaccgctataagctcttgaaaataagttata 31062950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 42139465 - 42139286
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||| | ||||||||||| | ||||||||||||||||  | ||||  |||||||||| ||||||||||| ||||  ||||||||||||| ||||||||    
T  42139465 gataaataatgataagctataatctacttgaattagcttgac-aaaaccgctataagctaataaaaataagctata--agcttgtgagaaagtgacaatt 42139369  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggccctta 212  Q
    || || || ||  |||| ||||| | ||| |||||||  |||| |  || ||||||| ||| |||||  ||||||| ||||||    
T  42139368 accaaacatgtattttttagtcaaatgagcttataagacataagctttaagctcaaaaatgggtcttgtcaaacagaccctta 42139286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 27679142 - 27679079
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||| || |||||||||||||||||||| |||||| ||||||||||  |||||||||| ||||    
T  27679142 taagccataagctacttgaattagcttattaaaaaacgctataagctagtaaaaataagctata 27679079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 15804486 - 15804440
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaa 76  Q
    |||||| | ||||||||||| ||||||||||||||||||||||||||    
T  15804486 gataaataatgataagctataagctacttgaattagcttatcaaaaa 15804440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 38808956 - 38809047
Alignment:
Q  55 acttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtccttttca 148  Q
    ||||| |||||||||||| |||| ||||||||||  ||||| |||| ||||  ||||||||||||| ||||| |||| || |||||| ||||||    
T  38808956 acttggattagcttatcataaaacgctataagctagtaaaattaagctata--agcttgtgagaaagtgacagttaccaaacaggtctttttca 38809047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 5774231 - 5774186
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||    
T  5774231 agctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 5774186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 39241122 - 39241167
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||    
T  39241122 agctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 39241167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 44810140 - 44810054
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgaga 118  Q
    |||||||| || |||  ||| |||||||||||||||||||| |||||| |||| |||||  |||||||||| ||||  |||||||||||    
T  44810140 gataaaaaatggtaacatataagctacttgaattagcttattaaaaaacgctaaaagctagtaaaaataagctata--agcttgtgaga 44810054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 12359877 - 12359923
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataa 99  Q
    |||||||||||| |||||||||||||| ||||||||  |||||||||    
T  12359877 ctacttgaattaacttatcaaaaaatgttataagctagtaaaaataa 12359923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 1875994 - 1876039
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  1875994 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 1876039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 5330556 - 5330507
Alignment:
Q  37 attgataagctattagctacttgaattagcttatcaaaaaatgctataag 86  Q
    |||||| || ||| |||||||| |||||||||||||||||| ||||||||    
T  5330556 attgatgagttataagctacttaaattagcttatcaaaaaaggctataag 5330507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 7454670 - 7454625
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  7454670 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 7454625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 8875811 - 8875766
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  8875811 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 8875766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 12160875 - 12160920
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  12160875 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12160920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 14958258 - 14958213
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  14958258 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 14958213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 34245384 - 34245339
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  34245384 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 34245339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 36936034 - 36936079
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  36936034 agctacttgaaatagcttttcaaaaaacgctataagctcattaaaa 36936079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 38324376 - 38324331
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  38324376 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 38324331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 42034488 - 42034452
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaa 75  Q
    ||||||||||| | |||||||||||||||||||||||    
T  42034488 tgataagctataatctacttgaattagcttatcaaaa 42034452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 1621545 - 1621620
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||    
T  1621545 gataaaaactgataagctataagctacttgaattagcttatcaaaaaacgctaaaagcacataaaaataagctata 1621620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 16869942 - 16870016
Alignment:
Q  31 ataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||    
T  16869942 ataaaaaatgataagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataaggtata 16870016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 32882790 - 32882703
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattac 131  Q
    |||||| | ||||||||||||||| |||||||||||   |||||||||| ||||||||| ||||  |||| |||||||||||||||||||    
T  32882790 taagctttaagctacttgaattagtttatcaaaaaacattataagctcaaaaaaataagctata--agctcgtgagaaaatgacaattac 32882703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 9004899 - 9004827
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||| |||| |||||| ||||||||||||||||||||||||||  | ||||||||||| |||||||| ||||    
T  9004899 aaaaagtgattagctataagctacttgaattagcttatcaaaaaccgatataagctcatgaaaataagctata 9004827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 34639854 - 34639774
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatga 124  Q
    |||||||| ||||||||||||||||||||||||| |||||||||  |  |||||| ||||||||  |||| ||||||||||||    
T  34639854 taagctataagctacttgaattagcttatcaaaagatgctataacatactaaaaaaaagttata--agctggtgagaaaatga 34639774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 20369156 - 20369102
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||    
T  20369156 agctacttgaattagcttatcacaaaatgatatacgctcataaaaataagatata 20369102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 42 - 125
Target Start/End: Complemental strand, 4283169 - 4283088
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    |||||||| ||||| ||||||||||||||||||||||| |||||||   |||||||||| ||||  |||| |||||| ||||||    
T  4283169 taagctataagctatttgaattagcttatcaaaaaatggtataagccagtaaaaataagctata--agctcgtgagagaatgac 4283088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 2941998 - 2941931
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatat 106  Q
    ||||||||| | ||||| ||| |||||||||||||||||||| |||||||  |||||||||| |||||    
T  2941998 tgataagctctaagctatttggattagcttatcaaaaaatgcaataagctagtaaaaataagctatat 2941931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 31812129 - 31812082
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataag 86  Q
    ||||||||||| ||||||||||||||||||||||||||  ||||||||    
T  31812129 tgataagctatgagctacttgaattagcttatcaaaaaccgctataag 31812082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 41892908 - 41892967
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaata 98  Q
    ||||||||| | ||||||||||||||||||||||||| | ||||||||||  ||||||||    
T  41892908 tgataagctgtaagctacttgaattagcttatcaaaacacgctataagctagtaaaaata 41892967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 15120889 - 15120947
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||| ||||||||||| |||||  ||| |||||||||||||||| |||||||||||||    
T  15120889 aaaaaatgataagctataagctatgtgagttagcttatcaaaaaacgctataagctcat 15120947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 10815201 - 10815156
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||    
T  10815201 agctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 10815156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 125
Target Start/End: Complemental strand, 28363515 - 28363422
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttat-caaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    |||||||| ||||||||||| |||||||||| |||||||||  |||||| ||||||||| ||  |||||||| ||||  ||||||||||||| ||||    
T  28363515 gataaaaaatgataagctataagctacttgagttagcttataaaaaaaacgctataagc-cagtaaaataagctata--agcttgtgagaaagtgac 28363422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 23590776 - 23590732
Alignment:
Q  52 gctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||||||| |||||| |||||||||||||||||||||| ||||    
T  23590776 gctacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 23590732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 6462402 - 6462465
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||| ||| ||||||||||||||||||||||||||   |||||||||  |||||||||| ||||    
T  6462402 taagatataagctacttgaattagcttatcaaaaaccactataagctagtaaaaataagctata 6462465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 20364445 - 20364399
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    ||||| ||||||||||||| |||||| |||| |||||||||||||||    
T  20364445 tacttaaattagcttatcacaaaatgatatacgctcataaaaataag 20364399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 27812965 - 27813007
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||||| |||||| |||||||||||||||||||||| ||||    
T  27812965 tacttgaaatagcttttcaaaaaatgctataagctcatgaaaa 27813007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 6789575 - 6789620
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  6789575 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 6789620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 15498783 - 15498738
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  15498783 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 15498738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 24171503 - 24171458
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  24171503 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 24171458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 29525282 - 29525327
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  29525282 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 29525327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 36761200 - 36761155
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  36761200 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36761155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 37530706 - 37530751
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  37530706 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 37530751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 41734230 - 41734275
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  41734230 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 41734275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 42422947 - 42422902
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  42422947 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42422902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 42709449 - 42709404
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  42709449 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42709404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 16218262 - 16218314
Alignment:
Q  44 agctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||| ||||| ||||| |||||| |||||||| ||||||||||||| ||||    
T  16218262 agctataagctatttgaaatagcttttcaaaaaacgctataagctcatgaaaa 16218314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 34640061 - 34640009
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||||||| | |||  |||||||||||||| ||||||| ||||    
T  34640061 ctacttgaattagcttattataaaccgctataagctcatagaaataagctata 34640009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Complemental strand, 34640118 - 34640078
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttat 70  Q
    |||||||| |||||| |||| ||||||||||||||||||||    
T  34640118 gataaaaagtgataaactataagctacttgaattagcttat 34640078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 35766697 - 35766657
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| ||| || ||||||||||||||||||||||    
T  35766697 agctacttgaaatagtttttcaaaaaatgctataagctcat 35766657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 205
Target Start/End: Complemental strand, 37083930 - 37083755
Alignment:
Q  29 tgataaaaat-tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaa 127  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||  |||||||||| ||||  |||| |||||||| |||||     
T  37083930 tgataaaaatatgataagctataagctacttgaattagcttattaaaaattgctataagctagtaaaaataagctata--agctcgtgagaaagtgacag 37083833  T
Q  128 ttactaaccaggtccttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacag 205  Q
    ||||  | |  ||| |||| | ||| | ||| |||||||  |||| | ||| |||| |||||||| ||||||||||||    
T  37083832 ttacctaacgtgtcttttttaatcaaatgagcttataagacataagctataagctcgaatatgtggcttaccaaacag 37083755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 36879053 - 36879117
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||| | |||||||||||||||||||| |||||||||||||||||  |||||||||||||||    
T  36879053 ataagctctaagctacttgaattagcttataaaaaaatgctataagctagtaaaaataagttata 36879117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 32117899 - 32117833
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||||| ||||||||||| || ||||||||||||||||||||||||  |||||||||||| ||||    
T  32117899 gataaaaaatgataagctatcaggtacttgaattagcttatcaaaaaactctataagctcatgaaaa 32117833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 38684772 - 38684829
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataa 99  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  38684772 taagctataagctacttgaattagcttatcaaaaaacgctataagctagtaaaaataa 38684829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 32109585 - 32109521
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||||  |||||||||| ||||    
T  32109585 ataagctataagctacttgaattagcttatcaaaaattgctttaagcttttaaaaataagctata 32109521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 125
Target Start/End: Original strand, 32326151 - 32326235
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    ||||||||||| ||||||||||||||||||||||||||   |||||||||  |||||||||| || |  ||||||||||||| ||||    
T  32326151 tgataagctataagctacttgaattagcttatcaaaaacctctataagctagtaaaaataagctaca--agcttgtgagaaagtgac 32326235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 43822598 - 43822510
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattac 131  Q
    ||||||| | ||||||||||||||||||||||||||   |||||| ||||| |||||||| ||||  ||||||||  ||||||||||||||    
T  43822598 ataagctttaagctacttgaattagcttatcaaaaaccactataatctcatgaaaataagctata--agcttgtgtaaaaatgacaattac 43822510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 212
Target Start/End: Original strand, 9198195 - 9198363
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggtc 141  Q
    |||||||  ||||||||||||||||||||||||||  ||||||||||  |||||||||| | ||  |||| |||||||| ||||  ||||||| | ||||    
T  9198195 taagctaaaagctacttgaattagcttatcaaaaaccgctataagctagtaaaaataagcttta--agctcgtgagaaagtgacggttactaaacgggtc 9198292  T
Q  142 cttttcagtcatacgagattataagctataaaccataggctcaaatatgtgtcttaccaaacaggccctta 212  Q
     |||| ||| | | ||| ||| | | ||||| | ||| ||||||| || | ||| ||||||||| ||||||    
T  9198293 ttttttagtaaaaagagcttaaaggatataagctataagctcaaaaatatttctaaccaaacagaccctta 9198363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 32582535 - 32582460
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| ||||||||||| ||||| ||||| |  |||||||||||| ||||||||||  |||||||||| ||||    
T  32582535 gataaaaagtgataagctataagctagttgaactgccttatcaaaaaaggctataagctagtaaaaataagctata 32582460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 32645826 - 32645687
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatt 129  Q
    |||||||| ||||||||| | |||||||||| ||| ||||||||||   ||||||||||||| |||||||  ||||  |||| |||  ||||||||||||    
T  32645826 gataaaaagtgataagctttaagctacttgacttaacttatcaaaacc-gctataagctcattaaaataaactata--agctcgtgtaaaaatgacaatt 32645730  T
Q  130 actaaccaggtccttttcagtcatacgagattataagctataa 172  Q
    ||||| ||  || |||| | ||| ||||| |||||| ||||||    
T  32645729 actaaacaactcttttttaatcacacgagcttataaactataa 32645687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 20873194 - 20873264
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataag 100  Q
    |||||| | ||||||||||| || |||||||||||||||||||||||   |||||||||  ||||||||||    
T  20873194 gataaataatgataagctataagttacttgaattagcttatcaaaaaccactataagctagtaaaaataag 20873264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 55226433 - 55226391
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataa 93  Q
    |||||||||||||||||| |||||||| |||||||||||||||    
T  55226433 agctacttgaattagcttttcaaaaaacgctataagctcataa 55226391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 12122842 - 12122879
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  12122842 agctacttgaattagcttatcaaaaaacgctataagct 12122879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 11042041 - 11041989
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| | ||||||||||||||||||| || || |||||||||||||    
T  11042041 tgataagctataaactacttgaattagcttatctaagaacgctataagctcat 11041989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 44539195 - 44539132
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||| ||||||||||||||||||||||||||||||   ||||||||| || ||| |||| ||||    
T  44539195 taagttattagctacttgaattagcttatcaaaaaccactataagcttatgaaagtaagctata 44539132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 131
Target Start/End: Complemental strand, 1384247 - 1384160
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattac 131  Q
    |||||||| |||||||||| |||   |||||||||| || ||||||| |||||||||||  |||  ||||||||| ||||||||| ||||    
T  1384247 taagctataagctacttgagttaatctatcaaaaaacgcgataagcttataaaaataagcaata--agcttgtgataaaatgacagttac 1384160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 2557863 - 2557908
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  2557863 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 2557908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 96
Target Start/End: Complemental strand, 8879510 - 8879457
Alignment:
Q  43 aagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    |||||||  |||||||||| |||||| |||||||| ||||||||||||| ||||    
T  8879510 aagctatcggctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 8879457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Original strand, 9558824 - 9558861
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  9558824 tacttgaattagattatcaaaaaacgctataagctcat 9558861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 29296786 - 29296831
Alignment:
Q  57 ttgaattagcttatcaaaaaatgctataagctcataaaaataagtt 102  Q
    |||||||| |||||||| |||||||||||| | |||||||||||||    
T  29296786 ttgaattaacttatcaataaatgctataagattataaaaataagtt 29296831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 34435936 - 34435981
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  34435936 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 34435981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 41991645 - 41991690
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  41991645 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 41991690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 48747542 - 48747505
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  48747542 agctacttgaattagcttctcaaaaaatactataagct 48747505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 54463417 - 54463462
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  54463417 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 54463462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 28175581 - 28175654
Alignment:
Q  32 taaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||| ||||||||||| |||||||||| ||||||||||||| || |||||||||||||||||||||| ||||    
T  28175581 taaaaagtgataagctataagctacttgagttagcttatcaaagaaagctataagctcataaaaataagctata 28175654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 6244004 - 6243959
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  6244004 agctacttgaaatagcttttcaaaaaatgctataagctcataaaaa 6243959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 883822 - 883747
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| |||||| |||| | |||||||||||| ||||||| ||| | ||||| |||||| |||||||||||||    
T  883822 gataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttata 883747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Complemental strand, 1243151 - 1243076
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| |||||| |||| | |||||||||||| ||||||| ||| | ||||| |||||| |||||||||||||    
T  1243151 gataaaaagtgataaactataaactacttgaattaacttatcagaaacttctatatgctcatgaaaataagttata 1243076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 42967814 - 42967760
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataa 93  Q
    ||||||||| | ||||||||||||||||||||| ||||| | |||||||||||||    
T  42967814 tgataagctttaagctacttgaattagcttatcgaaaaacgttataagctcataa 42967760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 44235513 - 44235588
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattac 131  Q
    ||||||||||| ||||||||||||  |||||||||||| |||||||| ||||  ||||  ||||||| ||||||||||    
T  44235513 tacttgaattaacttatcaaaaaacactataagctcattaaaataagctata--agctcttgagaaagtgacaattac 44235588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 42328125 - 42328170
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||    
T  42328125 agctacttgaaatagcttttcaaaaaacgctataagctcataaaaa 42328170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 3370587 - 3370547
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| |||||| ||||||||||||||||||||||    
T  3370587 agctacttgaaatagcttttcaaaaaatgctataagctcat 3370547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 31226834 - 31226877
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||| |||||| |||||||| ||||||||||||||||||    
T  31226834 ctacttgaaatagcttttcaaaaaacgctataagctcataaaaa 31226877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 18654206 - 18654160
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataa 99  Q
    |||||||||||||||||||| |||  |||||||||| ||||||||||    
T  18654206 ctacttgaattagcttatcagaaacagctataagcttataaaaataa 18654160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 88
Target Start/End: Complemental strand, 44818856 - 44818822
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagct 88  Q
    |||||||||||||||||||||||| ||||||||||    
T  44818856 tacttgaattagcttatcaaaaaacgctataagct 44818822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 18654709 - 18654754
Alignment:
Q  54 tacttgaattagcttatcaaaaaatgctataagctcataaaaataa 99  Q
    ||||||||||||||||||| |||   ||||||||||||||||||||    
T  18654709 tacttgaattagcttatcacaaacaactataagctcataaaaataa 18654754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 24432772 - 24432830
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagtt 102  Q
    |||| ||| |||||||||||||||||||||| |  ||  ||||||||||||||||||||||    
T  24432772 taagttataagctacttgaattagcttatcacactat--tataagctcataaaaataagtt 24432830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 24847135 - 24847078
Alignment:
Q  73 aaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaatta 130  Q
    ||||||||||||| |||||||||||||| ||||| ||||  ||| ||||| |||||||    
T  24847135 aaaaatgctataaactcataaaaataagatatataagctcctgataaaataacaatta 24847078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 27826847 - 27826802
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  27826847 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 27826802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 29994177 - 29994222
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  29994177 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 29994222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 33982276 - 33982313
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||| ||||||||||||||| ||||||||||    
T  33982276 agctacttgaaatagcttatcaaaaaacgctataagct 33982313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Complemental strand, 38224763 - 38224726
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  38224763 agctacttgaaatagcttctcaaaaaatgctataagct 38224726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 42328984 - 42329029
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  42328984 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 42329029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 44104537 - 44104574
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  44104537 agctacttgaaatagcttttcaaaaaatgctataagct 44104574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 46672644 - 46672599
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  46672644 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 46672599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 2525227 - 2525172
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctc 89  Q
    ||||| |||||| |||| ||||||||  |||||||||||||||| ||||||||||||    
T  2525227 aaaaaatgataa-ctataagctacttagattagcttatcaaaaactgctataagctc 2525172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 4060490 - 4060450
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  4060490 agctacttgaaatagcttttcaaaaaacgctataagctcat 4060450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 15568811 - 15568759
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||||||| |||||  | ||  |||||||||||||||||||||    
T  15568811 ctacttgaattagcttattaaaaagcgatacgagctcataaaaataagttata 15568759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 25696171 - 25696131
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    |||||||||||||| ||| |||||||| |||||||||||||    
T  25696171 agctacttgaattaacttctcaaaaaacgctataagctcat 25696131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 37869039 - 37868987
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||||||| ||||||||| |  |||||| |||||||||||||| ||||    
T  37869039 ctacttgaattagtttatcaaaacaatctataaactcataaaaataagctata 37868987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 46349845 - 46349885
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  46349845 agctacttgaaatagcttttcaaaaaacgctataagctcat 46349885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 49895 - 49988
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||  ||||||||||| |||||||||| ||||  |||| |||||||| ||||    
T  49895 gataaaaagtgataagctataagctacttgaattagcttatcacaaaccgctataagctcttaaaaataagctata--agctcgtgagaaagtgac 49988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 41 - 170
Target Start/End: Complemental strand, 14243237 - 14243110
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggt 140  Q
    ||||||||| | ||| || |||||||||||||||||  | |||||| ||||||||||||||  |||||| |||||| ||||| ||||||||| |  ||||    
T  14243237 ataagctataaactatttcaattagcttatcaaaaaccgatataagttcataaaaataagt--tattagtttgtgaaaaaataacaattactgaataggt 14243140  T
Q  141 ccttttcagtcatacgagattataagctat 170  Q
    | |||| |||||||| || |||||||||||    
T  14243139 cttttttagtcatacaagcttataagctat 14243110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 172
Target Start/End: Complemental strand, 41470156 - 41470027
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccaggt 140  Q
    ||||||||| |||||||||| ||||||||| ||||||  |||| ||||  ||||| |||||||||  |||| |||||||||||||| |||| || | |||    
T  41470156 ataagctataagctacttgagttagcttataaaaaaacactatgagctagtaaaattaagttata--agctcgtgagaaaatgacagttaccaaacgggt 41470059  T
Q  141 ccttttcagtcatacgagattataagctataa 172  Q
    | |||| ||| ||| ||| |||||||||||||    
T  41470058 cttttttagttatatgagcttataagctataa 41470027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 27316671 - 27316735
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    ||||||||| | |||||||||||| |||| |||||||||||||||||| ||||||||||| ||||    
T  27316671 ataagctataaactacttgaattaacttaccaaaaaatgctataagctaataaaaataagatata 27316735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 172
Target Start/End: Original strand, 28444780 - 28444911
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgacaattactaaccag 138  Q
    ||||||||||| |||||||| ||||||||||||||||    || |||||||||||||||||| ||||  ||||  ||  ||||||| | |||| || |||    
T  28444780 tgataagctataagctacttaaattagcttatcaaaaccctctctaagctcataaaaataagctata--agctcttgtaaaaatgagagttaccaaacag 28444877  T
Q  139 gtccttttcagtcatacgagattataagctataa 172  Q
    ||  |||| | ||||||||| |||||||||||||    
T  28444878 gtattttttaatcatacgagcttataagctataa 28444911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 3346232 - 3346307
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| ||||||||||  | | | ||||||||||||||| |||||| ||| |||||||||||| |||||||||    
T  3346232 gataaaaagtgataagctacaaacaatttgaattagcttatcgaaaaatactacaagctcataaaactaagttata 3346307  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 37740678 - 37740626
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||||||| ||||||||| |||||| |||||||||  |||||||||||||    
T  37740678 tgataagctataagctacttggattagcatatcaaaaaccgctataagctcat 37740626  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 25019621 - 25019696
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||| | | ||||||| ||||||||||||||| |||||| ||  |  |||||||||||||||| ||||||||    
T  25019621 gataaaaagttacaagctataagctacttgaattagattatcataagctcatataagctcataaaaagaagttata 25019696  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 14911903 - 14911858
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  14911903 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 14911858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 25100176 - 25100221
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  25100176 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 25100221  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 25100384 - 25100339
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  25100384 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 25100339  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 36859366 - 36859321
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  36859366 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 36859321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 40529639 - 40529594
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  40529639 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 40529594  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 43800730 - 43800775
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  43800730 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 43800775  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 2595267 - 2595231
Alignment:
Q  52 gctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||||||||||||||||||  |||||||||    
T  2595267 gctacttgaattagcttatcaaaaaacactataagct 2595231  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 18892296 - 18892356
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagtt 102  Q
    |||| ||| |||||||||||||||||||||| |||  ||||||||||  |||| |||||||    
T  18892296 taagatataagctacttgaattagcttatcagaaagcgctataagctagtaaatataagtt 18892356  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 21367217 - 21367268
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcat 91  Q
    ||||||| ||| |||||||| |||||||||| ||||||| |||||||||||||    
T  21367217 tgataagttataagctactt-aattagcttaacaaaaaacgctataagctcat 21367268  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 125
Target Start/End: Original strand, 24523835 - 24523916
Alignment:
Q  42 taagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaatgac 125  Q
    |||||||| |||||||||||| ||| |||||||||   || ||||||  |||||||||||||||  ||||||| ||||| ||||    
T  24523835 taagctataagctacttgaatcagcatatcaaaaacctctctaagctagtaaaaataagttata--agcttgttagaaagtgac 24523916  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 43408616 - 43408553
Alignment:
Q  41 ataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||  ||||||||||||||||||||| |||||||||| | ||  | |||||||||||||    
T  43408616 ataagctatatgctacttgaattagcttatca-aaaatgctattatctagtgaaaataagttata 43408553  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 4912438 - 4912383
Alignment:
Q  33 aaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||    
T  4912438 aaaaattgataagatataagctacttgaagtagtttatcaaaaaatgctataagct 4912383  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 20645796 - 20645751
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||||||||    
T  20645796 agctacttgaaatagcttttcaaaaaacgctataagctcataaaaa 20645751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 12130619 - 12130574
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  12130619 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 12130574  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 21860372 - 21860327
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  21860372 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 21860327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 24119200 - 24119245
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  24119200 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 24119245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 724641 - 724585
Alignment:
Q  32 taaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagct 88  Q
    |||||| ||||| ||||| |||||||  ||||||||||||||||| || ||||||||    
T  724641 taaaaagtgatacgctataagctactcaaattagcttatcaaaaagtgttataagct 724585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 3341174 - 3341097
Alignment:
Q  43 aagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttatattagcttgtgagaaaat 122  Q
    ||||||| | |||||| ||||||||||||| |||  || ||||  ||||||||||||||||||  |||| ||||||||||    
T  3341174 aagctataatctactttaattagcttatcacaaaccgccataatttcataaaaataagttata--agctcgtgagaaaat 3341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 9618505 - 9618557
Alignment:
Q  53 ctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||||||||| ||||||| |||||||||  |||||| ||| ||||    
T  9618505 ctacttgaattagcttataaaaaaatactataagcttgtaaaaacaagctata 9618557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 339023 - 339081
Alignment:
Q  30 gataaaaattgataagctattagctacttgaattagcttatcaaaaaatgctataagctc 89  Q
    |||||||  ||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  339023 gataaaaggtgataagctataagctacttgaattagcttatc-aaaaacgctataagctc 339081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 166662 - 166598
Alignment:
Q  39 tgataagctattagctacttgaattagcttatcaaaaaatgctataagctcataaaaataagttata 105  Q
    |||||||||||  |||||||| |||||||||||  |||| ||||||||||  |||||||||||||||    
T  166662 tgataagctataggctacttggattagcttatc--aaaacgctataagctagtaaaaataagttata 166598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 7129 - 7084
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagctcataaaaa 96  Q
    ||||||||||| |||||| |||||||| ||||||||||||| ||||    
T  7129 agctacttgaaatagcttttcaaaaaacgctataagctcatgaaaa 7084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 94365 - 94402
Alignment:
Q  51 agctacttgaattagcttatcaaaaaatgctataagct 88  Q
    ||||||||||| |||||| |||||||||||||||||||    
T  94365 agctacttgaaatagcttctcaaaaaatgctataagct 94402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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