View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_high_25 (Length: 268)
Name: NF14981_high_25
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 2320333 - 2320099
Alignment:
| Q |
16 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2320333 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
2320234 |
T |
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| Q |
116 |
tgtgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgaggacgatgaacca |
215 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2320233 |
tgtgtagagggccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagcgtaacgaggacgatgaacca |
2320134 |
T |
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| Q |
216 |
tgtttccatatttacgtaaatgtttggtgcaactt |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2320133 |
tgtttccatatttacgtaaatgtttggtgcaactt |
2320099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 2293013 - 2292779
Alignment:
| Q |
16 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293013 |
acagtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatgggga |
2292914 |
T |
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| Q |
116 |
tgtgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgaggacgatgaacca |
215 |
Q |
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| T |
2292913 |
tgtgtagagggccgggagggaggggtatggtggttgtgaataaggagaggatggctctgataaggaagatgatgcaaagagtaacgaggacaatgaacca |
2292814 |
T |
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| Q |
216 |
tgtttccatatttacgtaaatgtttggtgcaactt |
250 |
Q |
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|| |||||||||||||||||||||||||||||||| |
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| T |
2292813 |
tggttccatatttacgtaaatgtttggtgcaactt |
2292779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 2309340 - 2309110
Alignment:
| Q |
20 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
119 |
Q |
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| T |
2309340 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
2309241 |
T |
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| Q |
120 |
tagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgaggacgatgaaccatgtt |
219 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
2309240 |
tagagggccgggagggaggggtacagtggttgtgaagaaggagagcatggctctgataaggaagatgatgcagagagtaacgaggactatgaaccatgtt |
2309141 |
T |
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| Q |
220 |
tccatatttacgtaaatgtttggtgcaactt |
250 |
Q |
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|| |||||||||||||||||||||||||||| |
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| T |
2309140 |
tctatatttacgtaaatgtttggtgcaactt |
2309110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 2326183 - 2325979
Alignment:
| Q |
20 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatgtg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||| |||| | | ||||||||||||||||||| |
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| T |
2326183 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaaaatgattttcggagccattgtatgcttgtgatgatggggatgtg |
2326084 |
T |
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| Q |
120 |
tagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgaggacgatgaaccatgtt |
219 |
Q |
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| | || | |||||||||||||||||||||||||||| ||||||| |||||| ||| |||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
2326083 |
tggtgggctgggagggaggggtacggtggttgtgaaggaggagagaatggctttgacgaggaagatgatgcaaagagtaatgaggacgatgaaccatgtt |
2325984 |
T |
|
| Q |
220 |
tccat |
224 |
Q |
| |
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||||| |
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| T |
2325983 |
tccat |
2325979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 2302630 - 2302424
Alignment:
| Q |
18 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||| || | |||||||| |||||||||| |
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| T |
2302630 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggaggatggttttcggagcaactgaatgtttgtgaggatggggatg |
2302531 |
T |
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| Q |
118 |
tgtagaggtccgggagggaggggtacggtggttgtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgaggacgatgaaccatg |
217 |
Q |
| |
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||| |||| || ||||||| ||||||||||||||||||| ||| || ||| ||| ||| |||||||||||||| ||||||| |||||| |||||||||| |
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| T |
2302530 |
tgtggagggccaggagggaagggtacggtggttgtgaaggaggcaagaatgactccgatgaggaagatgatgcagagagtaatgaggacaatgaaccatg |
2302431 |
T |
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| Q |
218 |
tttccat |
224 |
Q |
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||||||| |
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| T |
2302430 |
tttccat |
2302424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 2329898 - 2329808
Alignment:
| Q |
20 |
tgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgat |
110 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||| |||| || ||||||| | ||| |||||| | |||||||||| |
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| T |
2329898 |
tgatgataggaccatgtttggcatgaagagttctgagaaaaggttcaagctgggcgaatgattttcgaagccattggatgcttgtgatgat |
2329808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 2350200 - 2349982
Alignment:
| Q |
18 |
agtgatgataggaccatgtttggcatggagagttttgagaaaaggttcaagttgggagattgatttttggagcaattggaagtttgtgatgatggggatg |
117 |
Q |
| |
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||||||||||||||||| ||||| ||||| ||||||| ||||||||| |||||||| ||||||| ||||| || ||| ||||||| |||||||| |
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| T |
2350200 |
agtgatgataggaccatatttggtgtggagggttttgataaaaggttcgagttgggacgatgattttcggagccataggatacttgtgataatggggata |
2350101 |
T |
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| Q |
118 |
tgtagaggtccgggagggaggggtacggtggtt------------gtgaagaaggagaggatggctctgataaggaagatgatgcatagagtaacgagga |
205 |
Q |
| |
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|| | || ||||||||||||| | |||||||| |||| | |||||| |||||||||||| |||||||||||||| |||| ||| || |
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| T |
2350100 |
tgcggtggaccgggagggagggttgcggtggttttgttggtggtggtgagggaggagaagatggctctgatgaggaagatgatgcagagagaaacaagtg |
2350001 |
T |
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| Q |
206 |
cgatgaaccatgtttccat |
224 |
Q |
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| ||||||||||||||||| |
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| T |
2350000 |
caatgaaccatgtttccat |
2349982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 2329739 - 2329682
Alignment:
| Q |
167 |
tggctctgataaggaagatgatgcatagagtaacgaggacgatgaaccatgtttccat |
224 |
Q |
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|||||||||| |||||||||||||| |||| ||| || ||||||||||||||||||| |
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| T |
2329739 |
tggctctgatgaggaagatgatgcagagagaaacaagtgcgatgaaccatgtttccat |
2329682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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