View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_high_3 (Length: 574)
Name: NF14981_high_3
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_high_3 |
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| [»] scaffold0393 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 556
Target Start/End: Original strand, 2408743 - 2409301
Alignment:
| Q |
14 |
cataggatgtaggtataacaattatttactcagattagtcatcataactaattggccacagtatactacagtaggaacacttcaatgcactctatttaac |
113 |
Q |
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| T |
2408743 |
cataggatgtaggtataacaattatttactcagattagtcatcataactaattggccacagtataatacagtaggaacacttcaatgcactctatttaac |
2408842 |
T |
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| Q |
114 |
aagaaattaacctaattatttcaaccatattcaaaattcaagtaaataactctaaacaacgatgaagattaagaataacttagaaaacgataataagttg |
213 |
Q |
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| T |
2408843 |
aagaaattaacctaattatttcaaccatattcaaaattcaagtaaataactctaaacaacgatgaagattaagaataacttagaaaacgataataagttg |
2408942 |
T |
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| Q |
214 |
catttcaatgaaaacaagtaatatatctaataatcatgaacaaatctttacctcaacaatgataacaagatgcgtagaactctccttgatgaagaatcac |
313 |
Q |
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| T |
2408943 |
catttcaatgaaaacaagtaatatatctaataattatgaacaaatctttacctcaacattgataacaagatgtgtagaactctccttgatgaagaatcac |
2409042 |
T |
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| Q |
314 |
gatttgagtaactttggtttgggaatatagggctaccacaagtgatgtatcataac------------tcc---tttttaatatccggaccgatccatgg |
398 |
Q |
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| T |
2409043 |
gatttgagcaactttgatttgggaatatagggttaccacaagtgatgtatcataacccggttttcaaatccgagtctttaatatccggtccgagctatgg |
2409142 |
T |
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| Q |
399 |
cccatatcacggatttgggtcgggttttccgaaccagttcacaaaatattatgttgcggtt-nnnnnnnnnnntctgggaaagtgagaaatctacaataa |
497 |
Q |
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| T |
2409143 |
cccatatcacagatttgggtcgggttttctgacccagttcacaaaatattatgttgcggttaaaaaaaaaaaatctgggaaagtgagaaatctacaatca |
2409242 |
T |
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| Q |
498 |
ccaacgaatactagaaagtttgaaagtgagaatgagtgcaagtaatttggtagcagatc |
556 |
Q |
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| T |
2409243 |
ccaacgaatactagaaagtttcgaagtgagaatgagtgcaagtaatttggtagcagatc |
2409301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0393 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: scaffold0393
Description:
Target: scaffold0393; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 472 - 555
Target Start/End: Original strand, 11546 - 11631
Alignment:
| Q |
472 |
ctgggaaagtgagaaatctacaa-ta-accaacgaatactagaaagtttgaaagtgagaatgagtgcaagtaatttggtagcagat |
555 |
Q |
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| T |
11546 |
ctgggaaagtgagaaatctaaaaatacaccaacgaatactagaaagtttcaaagtgagaatgagtgcaagtaatttggtaacagat |
11631 |
T |
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