View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_high_31 (Length: 240)
Name: NF14981_high_31
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_high_31 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 4591747 - 4591972
Alignment:
| Q |
18 |
atacatgcatccaatcaagccatatcataatgccaattgtttaggttacttccttaaatatctcaaaatataa---acatggggtgatttgataagattc |
114 |
Q |
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| T |
4591747 |
atacatgcatccaatcaagccatgtcataatggcaattgtttaggttacttcctcaaatatctcaaaatataataaacatggggtgatctgataagattc |
4591846 |
T |
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| Q |
115 |
tacgcgtaaaaaagctttacaccgtcagtgctcagcaattaatctctgcaaagtatttctgcctaaaagatttgataggattctacatatgatttttatt |
214 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4591847 |
aacgcgtaaaaaagctttacaccgtcagttttcagcaattaatctctgcaaagtatttctgcctacaagatttgataggattctacatatgatttttatt |
4591946 |
T |
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| Q |
215 |
ttgttttgaaaaaatggatcggatcc |
240 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4591947 |
ttgttttgaaaaaatggatcggatcc |
4591972 |
T |
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