View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_high_33 (Length: 235)

Name: NF14981_high_33
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_high_33
NF14981_high_33
[»] chr1 (9 HSPs)
chr1 (1-235)||(30656485-30656722)
chr1 (1-235)||(30689544-30689778)
chr1 (1-235)||(30698427-30698664)
chr1 (3-235)||(30671648-30671883)
chr1 (36-235)||(30718622-30718821)
chr1 (58-235)||(30710370-30710547)
chr1 (171-235)||(16252066-16252130)
chr1 (171-235)||(33042614-33042678)
chr1 (190-233)||(30623894-30623937)
[»] chr4 (2 HSPs)
chr4 (99-235)||(56539196-56539332)
chr4 (10-68)||(56539349-56539407)
[»] chr2 (1 HSPs)
chr2 (194-235)||(38337633-38337674)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30656485 - 30656722
Alignment:
Q  1 tcatcttgtttccctgctttat---tctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatcctt 97  Q
    ||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30656485 tcatcttgtctccctgctttattattctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatcctt 30656584  T
Q  98 ttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatc 197  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  30656585 ttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgaaaatgcagcttgatc 30656684  T
Q  198 ataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30656685 ataagctaaagcagcatcttcagcactatcaaatgttc 30656722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30689544 - 30689778
Alignment:
Q  1 tcatcttgtttccctgctttattctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||    
T  30689544 tcatcttgtttccctgctttattctttacaccttttgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctc 30689643  T
Q  101 tgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcata 200  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||| || ||||||||||||||||||||||||||||||    
T  30689644 tgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcata 30689743  T
Q  201 agctaaagcagcatcttcagcactatcaaatgttc 235  Q
    |||||||||||||||||||||||||||||||||||    
T  30689744 agctaaagcagcatcttcagcactatcaaatgttc 30689778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 30698427 - 30698664
Alignment:
Q  1 tcatcttgtttccctgctttatt---ctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatcctt 97  Q
    |||||||||||||||||||||||   ||||  | ||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30698427 tcatcttgtttccctgctttattattctttgtagcttttgataacatttttctttgttcatagtgcctttcttttagtgcaagtgcaggtgaagatcctt 30698526  T
Q  98 ttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatc 197  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||| ||||||||||||||    
T  30698527 ttctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacagcattattacctctcattgagaatgcagcttgatc 30698626  T
Q  198 ataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30698627 ataagctaaagcagcatcttcagcactatcaaatgttc 30698664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 30671648 - 30671883
Alignment:
Q  3 atcttgtttccctgctttatt---ctttacaccttttgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatcctttt 99  Q
    |||||||||||||||||||||   ||||  | ||||||||||||  |||||||||||| |||| ||||| || |||||||||||||||||||| |||| |    
T  30671648 atcttgtttccctgctttattattctttgtagcttttgataacatttttctttgttcacagtgtctctccttgagtgcaagtgcaggtgaagacccttct 30671747  T
Q  100 ctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcat 199  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30671748 ctgcaatcatattgaatctcttgcaaagattctttgaccctttgaacagaaaaattgagcacggcattattacctctcattgaaaatgcagcttgatcat 30671847  T
Q  200 aagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30671848 aagctaaagcagcatcttcagcactgtcaaatgttc 30671883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 30718622 - 30718821
Alignment:
Q  36 tgataacaactttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttg 135  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||    
T  30718622 tgataacatctttctttgttcatagtgcctctcttttagtgcaagtgcaggtgaagacccttctctgcaatcatattgaatcgcttgcaaagattctttg 30718721  T
Q  136 accttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||| |||| |||||||| |||||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30718722 accctttgaacagaaaaattgagcacagcatcataacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 30718821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 58 - 235
Target Start/End: Original strand, 30710370 - 30710547
Alignment:
Q  58 tagtgcctctcttttagtgcaagtgcaggtgaagatccttttctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttga 157  Q
    ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| || |||||| ||||    
T  30710370 tagtgtctctctttgagtgcaagtgcaggtgaagacccttttctgcaatcatattgaatctcttgcaaagattctttgacgctttcgaaagaaaaattga 30710469  T
Q  158 gcacggcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30710470 ggaaagcattattacctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 30710547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 16252066 - 16252130
Alignment:
Q  171 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||||||||| |||||||||||||||||||  || ||  |||||||||||||||||||||    
T  16252066 acctctcattgaaaaagcagcttgatcataagctagtgctgctgcttcagcactatcaaatgttc 16252130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 33042678 - 33042614
Alignment:
Q  171 acctctcattgaaaatgcagcttgatcataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||| ||||| || |||||||||||||| ||||||||| |||| ||||||||||| ||||    
T  33042678 acctctcatggaaaaagctgcttgatcataagccaaagcagcagcttctgcactatcaaaggttc 33042614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 30623894 - 30623937
Alignment:
Q  190 gcttgatcataagctaaagcagcatcttcagcactatcaaatgt 233  Q
    |||||||||||||||||||||||| |||||||  ||||||||||    
T  30623894 gcttgatcataagctaaagcagcagcttcagctgtatcaaatgt 30623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 99 - 235
Target Start/End: Complemental strand, 56539332 - 56539196
Alignment:
Q  99 tctgcaatcatattgaatctcttgcaaagattctttgaccttttggacagaaaagttgagcacggcattattacctctcattgaaaatgcagcttgatca 198  Q
    |||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||||||||  ||||||||||||||| ||||||||||||||||||     
T  56539332 tctgcaatcatattgaatctcttgcaaatatcctttgaccctttgaacagaaaaattgagcacaacattattacctctcaatgaaaatgcagcttgatcg 56539233  T
Q  199 taagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||||||||||||| |||||||| ||||||||||    
T  56539232 taagctaaagcagcatcctcagcactgtcaaatgttc 56539196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 56539407 - 56539349
Alignment:
Q  10 ttccctgctttattctttacaccttttgataacaactttctttgttcatagtgcctctc 68  Q
    |||||||||||| | ||||||||||| ||||||| ||||||||||||| |||| |||||    
T  56539407 ttccctgctttactatttacacctttggataacatctttctttgttcacagtgtctctc 56539349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 38337674 - 38337633
Alignment:
Q  194 gatcataagctaaagcagcatcttcagcactatcaaatgttc 235  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||    
T  38337674 gatcataggctaaagcagcatcttctgcagtatcaaatgttc 38337633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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