View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_high_35 (Length: 218)
Name: NF14981_high_35
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 38468277 - 38468467
Alignment:
| Q |
11 |
ataatactatgttgtaagtaagagt--attgtgaatattcatgtttctcatatgaatgaatatcgatgattaaaatctcaatttgctcaatgaaattgtg |
108 |
Q |
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| T |
38468277 |
ataatattatgttgtaagtaagagtctattgtgaatattcatgtttctcatatgaatgaatatcaatgattaaaatctcaatttgctcaatgaaattgtg |
38468376 |
T |
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| Q |
109 |
agggtgtgtcaagttagtctaattcacttaacatggcatgcatgcacgcacgtgtacaacagtgtatttaacgtgccacattagcgcccct |
199 |
Q |
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| T |
38468377 |
agggtgtgtcaagttagtctaattcacttaacatggcatgcatgcacgcacgtgtacagcagtgtatttaacgtgccacattagcgcccct |
38468467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 38467520 - 38467648
Alignment:
| Q |
11 |
ataatactatgttgtaagtaagagt--attgtgaatattcatgtttctcatatgaatgaatatcgatgattaaaatctcaatttgctcaatgaaattgtg |
108 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
38467520 |
ataatgctatgttgtaagtaagagtctattgtgaatattcatgtctctcatatgaatgaatatcaatgattaaaatctcactttgctcaatgaaattgta |
38467619 |
T |
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| Q |
109 |
agggtgtgtcaagttagtctaattcactt |
137 |
Q |
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| T |
38467620 |
agggtgtgtcaagttagtctaattcactt |
38467648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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