View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_high_7 (Length: 436)

Name: NF14981_high_7
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_high_7
NF14981_high_7
[»] chr4 (50 HSPs)
chr4 (26-423)||(27495537-27495934)
chr4 (284-340)||(27412748-27412804)
chr4 (276-340)||(27585772-27585836)
chr4 (276-335)||(27559232-27559291)
chr4 (283-388)||(27424513-27424618)
chr4 (271-316)||(27460586-27460631)
chr4 (271-316)||(27480009-27480054)
chr4 (284-393)||(27485943-27486052)
chr4 (285-393)||(27478884-27478992)
chr4 (284-382)||(27503964-27504062)
chr4 (283-388)||(27411455-27411560)
chr4 (285-382)||(27475580-27475677)
chr4 (276-340)||(27415705-27415769)
chr4 (284-340)||(27524608-27524664)
chr4 (284-340)||(27563346-27563402)
chr4 (276-388)||(27567291-27567403)
chr4 (277-316)||(27466929-27466968)
chr4 (277-316)||(27474000-27474039)
chr4 (271-314)||(27505689-27505732)
chr4 (284-359)||(27506763-27506838)
chr4 (277-340)||(27513769-27513832)
chr4 (284-359)||(27595450-27595525)
chr4 (276-335)||(27600642-27600701)
chr4 (274-340)||(27570039-27570105)
chr4 (285-335)||(27571712-27571762)
chr4 (277-314)||(27444787-27444824)
chr4 (271-340)||(27469544-27469613)
chr4 (271-316)||(27476795-27476840)
chr4 (271-340)||(27487067-27487136)
chr4 (271-316)||(27502122-27502167)
chr4 (284-332)||(27420500-27420548)
chr4 (271-383)||(27423263-27423375)
chr4 (284-332)||(27425904-27425952)
chr4 (288-332)||(27490052-27490096)
chr4 (271-315)||(27557598-27557642)
chr4 (276-335)||(27414296-27414355)
chr4 (276-335)||(27419063-27419122)
chr4 (277-316)||(27498523-27498562)
chr4 (277-316)||(27526105-27526144)
chr4 (270-316)||(17970407-17970453)
chr4 (276-382)||(27514933-27515039)
chr4 (284-338)||(27577404-27577458)
chr4 (289-338)||(27508938-27508987)
chr4 (276-316)||(27421923-27421963)
chr4 (271-335)||(27446236-27446300)
chr4 (284-332)||(27468327-27468375)
chr4 (284-340)||(27497322-27497378)
chr4 (277-337)||(27500331-27500391)
chr4 (276-316)||(27540115-27540155)
chr4 (276-340)||(27556371-27556435)
[»] chr5 (4 HSPs)
chr5 (276-386)||(1754726-1754836)
chr5 (284-386)||(1756757-1756859)
chr5 (277-314)||(1759362-1759399)
chr5 (279-359)||(1754236-1754316)
[»] chr3 (8 HSPs)
chr3 (277-339)||(55088044-55088106)
chr3 (277-316)||(50904785-50904824)
chr3 (271-331)||(48840699-48840759)
chr3 (276-332)||(50910052-50910108)
chr3 (271-332)||(38024862-38024923)
chr3 (271-332)||(38031314-38031375)
chr3 (271-316)||(55084894-55084939)
chr3 (284-380)||(38043947-38044043)
[»] chr8 (2 HSPs)
chr8 (66-166)||(20903010-20903115)
chr8 (271-332)||(21607283-21607344)
[»] chr2 (1 HSPs)
chr2 (270-316)||(3073677-3073723)
[»] chr1 (1 HSPs)
chr1 (90-166)||(29309402-29309478)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 26 - 423
Target Start/End: Complemental strand, 27495934 - 27495537
Alignment:
Q  26 atgttattctacatgccttatgttatgttatataattattttcatataatgcataccctatgttattctacacgcttcaaagcagaatggctactaaagt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27495934 atgttattctacatgccttatgttatgttatataattattttcatgtaatgcataccctatgttattctacatgcttcaaagcagaatggctactaaagt 27495835  T
Q  126 tctagtcatctttaaccctgcatagtccatttgttgaaatggcagcaaagatcacatcttgatagaaaattgtgtagttcatttgcatttgatattactt 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27495834 tctagtcatctttaaccctgcatagtccatttgttgaaatggcagcaaagatcacatcttgatagaaaattgtgtagtccatttgcatttgatattactt 27495735  T
Q  226 atttgttgttgagattaaacttccaattgagaagtgactgtaacaaaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaa 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495734 atttgttgttgagattaaacttccaattgagaagtgactgtaacaaaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaa 27495635  T
Q  326 actcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatattggaacaacatatttcttctttttctcttctccaacatat 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27495634 actcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatattggaacaacatatttcttctttttctcttctccaacatat 27495537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 27412804 - 27412748
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    |||||||||||||||| |||||||||||||||| | |||||||||||||||||||||    
T  27412804 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcttcagctt 27412748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 27585836 - 27585772
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||||| ||||||||||||||||||| ||||||||||||| | |||||||||||||||| ||||    
T  27585836 atcttctgtgcaaggaatggtgagacctcccattggatgatcatatccaaactcttcttcggctt 27585772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 27559232 - 27559291
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    |||||| ||||||||||| |||||||||||||||||||||| | ||||||||||||||||    
T  27559232 atcttcactgcaaggaattgtgagaccacccattggatgatcatatccaaactcttcttc 27559291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 27424513 - 27424618
Alignment:
Q  283 ctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 382  Q
    ||||| |||||||| ||||||||||||||||||| | ||||| | |||||||||| || |  |||||||| |||||| | |||||| | |||||||||||    
T  27424513 ctgcacggaatggtaagaccacccattggatgatcatatccatattcttcttcagattgatttagcaattcttgaaatgaaggttggttcaagtatgata 27424612  T
Q  383 ttggaa 388  Q
     |||||    
T  27424613 ctggaa 27424618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 27460631 - 27460586
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27460631 aaaatgtcttctctgcaaggaatggtgagaccacccattggatgat 27460586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 27480054 - 27480009
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  27480054 aaaatgtcttctctgcaaggaatggtgagaccacccattggatgat 27480009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 284 - 393
Target Start/End: Original strand, 27485943 - 27486052
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatat 383  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    ||||| | ||||||||||||    
T  27485943 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatat 27486042  T
Q  384 tggaacaaca 393  Q
    ||| ||||||    
T  27486043 tgggacaaca 27486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 285 - 393
Target Start/End: Original strand, 27478884 - 27478992
Alignment:
Q  285 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatatt 384  Q
    ||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    ||||| | |||||||||||||    
T  27478884 gcaaggaatggtgaggccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaacaatggttggttcaagtatgatatt 27478983  T
Q  385 ggaacaaca 393  Q
    || ||||||    
T  27478984 gggacaaca 27478992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 382
Target Start/End: Complemental strand, 27504062 - 27503964
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 382  Q
    |||||||||||||||| |||||||||||||||| | ||||||||||||| || |||| ||  | ||| | |||||| | |||||| | |||||||||||    
T  27504062 tgcaaggaatggtgaggccacccattggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttggttcaagtatgata 27503964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 388
Target Start/End: Original strand, 27411455 - 27411560
Alignment:
Q  283 ctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 382  Q
    ||||||||||| |||||||||||||| ||||||| | ||||||| |||||||| |||| |  ||| |||| |||||| |  ||||| | |||||||||||    
T  27411455 ctgcaaggaattgtgagaccacccataggatgatcatatccaaattcttcttctgcttgatttagtaattcttgaaacgatggttggttcaagtatgata 27411554  T
Q  383 ttggaa 388  Q
     |||||    
T  27411555 ctggaa 27411560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 382
Target Start/End: Original strand, 27475580 - 27475677
Alignment:
Q  285 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgata 382  Q
    ||||||||||||||| |||||||| ||||||| | ||||||||||||| || |||| ||  | ||| | |||||| | |||||||| |||||||||||    
T  27475580 gcaaggaatggtgaggccacccatgggatgatcatatccaaactcttcctcggcttgactcaacaagtcttgaaatgaaggttgattcaagtatgata 27475677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 340
Target Start/End: Complemental strand, 27415769 - 27415705
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||||| |||||||||||||||| |||||||| | ||||| | ||||||||||||| |||||||    
T  27415769 atcttctgtgcaaggaatggtgaggccacccatggaatgatcatatccaaactcttcctcagctt 27415705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 27524664 - 27524608
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    |||| ||||||||||| |||||||||||||||| | ||||||||||||| |||||||    
T  27524664 tgcacggaatggtgaggccacccattggatgatcatatccaaactcttcctcagctt 27524608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 27563346 - 27563402
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    |||||||||| ||||| |||||||||||||||| | |||||||||||||||| ||||    
T  27563346 tgcaaggaattgtgaggccacccattggatgatcatatccaaactcttcttcggctt 27563402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 388
Target Start/End: Complemental strand, 27567403 - 27567291
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 375  Q
    |||||| ||||||||||| |||||||||||||||||||||| | | ||||| |||||||| | || |  ||| |||| |||||| |  ||||| | ||||    
T  27567403 atcttcgctgcaaggaattgtgagaccacccattggatgatcataaccaaattcttcttctgtttgatttagtaattcttgaaacgatggttggttcaag 27567304  T
Q  376 tatgatattggaa 388  Q
    ||||||| |||||    
T  27567303 tatgatactggaa 27567291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 27466968 - 27466929
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27466968 tcttctctgcaaggaatagtgagaccacccattggatgat 27466929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 27474039 - 27474000
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  27474039 tcttctccgcaaggaatggtgagaccacccattggatgat 27474000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 27505689 - 27505732
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatg 314  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  27505689 aaaatctcttctctgcaaggaatagtgagaccacccattggatg 27505732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 27506838 - 27506763
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 359  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||||| |||| |  |||||||| ||||||    
T  27506838 tgcaaggaatggtgagtccacccatgggatgatcatatccaaattcttcttccgcttgatgtagcaattcttgaaa 27506763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 340
Target Start/End: Original strand, 27513769 - 27513832
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||||||||||||||| |||||||||||||||||||||| | || || | | |||||||||||    
T  27513769 tcttctctgcaaggaatagtgagaccacccattggatgatcatattcatattgttcttcagctt 27513832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 27595525 - 27595450
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 359  Q
    |||||||||| || ||||||||||| |||||||| ||||||||||||| ||| |||| || ||| |||| ||||||    
T  27595525 tgcaaggaattgtaagaccacccatgggatgattgaatccaaactctttttctgcttgacttagtaattcttgaaa 27595450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 276 - 335
Target Start/End: Complemental strand, 27600701 - 27600642
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    ||||||| |||||||||| |||||||||||||||||||||||  | ||||| ||||||||    
T  27600701 atcttctttgcaaggaattgtgagaccacccattggatgattgtaaccaaattcttcttc 27600642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 27570039 - 27570105
Alignment:
Q  274 atatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||||||  |||||||||||||||| |||||||| ||||||| | |||| |||||||| |||||||    
T  27570039 atatcttcggtgcaaggaatggtgaggccacccatgggatgatcatatccgaactcttcctcagctt 27570105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 285 - 335
Target Start/End: Complemental strand, 27571762 - 27571712
Alignment:
Q  285 gcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    ||||||||| |||||||||||||||||||||| | ||||||| ||||||||    
T  27571762 gcaaggaattgtgagaccacccattggatgatcatatccaaattcttcttc 27571712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 314
Target Start/End: Original strand, 27444787 - 27444824
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatg 314  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  27444787 tcttctctgcaaggaattgtgagaccacccattggatg 27444824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 27469613 - 27469544
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||| ||||||||||||||||| || ||||||||||||||||| | | || |||| | |||||||||||    
T  27469613 aaaatttcttctctgcaaggaatagttagaccacccattggatgttcatattcaaattgttcttcagctt 27469544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 27476840 - 27476795
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  27476840 aaaatgtcttctctgcaaggaatagttagaccacccattggatgat 27476795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 340
Target Start/End: Complemental strand, 27487136 - 27487067
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    ||||| |||||| |||||||||| || ||||||||||||||||||| | || |||| | |||||||||||    
T  27487136 aaaatgtcttctttgcaaggaatagtaagaccacccattggatgatcatattcaaattgttcttcagctt 27487067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 27502122 - 27502167
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||||||||||||| || |||||||||||||||||||    
T  27502122 aaaatgtcttctctgcaaggaatagttagaccacccattggatgat 27502167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 27420548 - 27420500
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||    
T  27420548 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 383
Target Start/End: Complemental strand, 27423375 - 27423263
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgat 370  Q
    |||| ||||||  ||||||||| |||||| |||||||| ||||||||  | ||||||||||| || |||| ||  | ||||| |||||| | |||||| |    
T  27423375 aaaacatcttccgtgcaaggaacggtgaggccacccatgggatgattgtaaccaaactcttcctcggcttgactcaacaattcttgaaatgaaggttggt 27423276  T
Q  371 gcaagtatgatat 383  Q
     ||||||||||||    
T  27423275 tcaagtatgatat 27423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 27425952 - 27425904
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    |||||||||||||||| |||||||| ||||||| | |||||||||||||    
T  27425952 tgcaaggaatggtgaggccacccatgggatgatcatatccaaactcttc 27425904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 27490096 - 27490052
Alignment:
Q  288 aggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    |||||||||||| |||||||||||||||| | |||||||||||||    
T  27490096 aggaatggtgaggccacccattggatgatcatatccaaactcttc 27490052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 27557642 - 27557598
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatga 315  Q
    |||| |||||||||||| ||||| |||||||||||||||||||||    
T  27557642 aaaacatcttctctgcatggaatagtgagaccacccattggatga 27557598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 27414296 - 27414355
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    |||||| ||||| ||||| || ||||||||||||||||||| | ||||||| ||||||||    
T  27414296 atcttcactgcacggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27414355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 335
Target Start/End: Original strand, 27419063 - 27419122
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    |||||| | ||||||||| || ||||||||||||||||||| | ||||||| ||||||||    
T  27419063 atcttcaccgcaaggaattgtaagaccacccattggatgatcatatccaaattcttcttc 27419122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Complemental strand, 27498562 - 27498523
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||||| ||||||||| ||||||||||||||||||||||    
T  27498562 tcttctccgcaaggaatagtgagaccacccattggatgat 27498523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 27526105 - 27526144
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  27526105 tcttctctgcaaggaatagtgagaccacccgttggatgat 27526144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 17970453 - 17970407
Alignment:
Q  270 aaaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  17970453 aaaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 17970407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 382
Target Start/End: Complemental strand, 27515039 - 27514933
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 375  Q
    ||||||| | |||||||||||||| |||||||| ||||||| | ||||||| ||||| || | || ||  | ||| | |||||| | |||||||| ||||    
T  27515039 atcttctgtacaaggaatggtgaggccacccatgggatgatcatatccaaattcttcctcggattgactcaacaagtcttgaaatgaaggttgattcaag 27514940  T
Q  376 tatgata 382  Q
    |||||||    
T  27514939 tatgata 27514933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 338
Target Start/End: Complemental strand, 27577458 - 27577404
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagc 338  Q
    |||| ||||| |||||||||||||| || ||||| |||||||| |||||||||||    
T  27577458 tgcatggaattgtgagaccacccatagggtgattgaatccaaattcttcttcagc 27577404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 27508987 - 27508938
Alignment:
Q  289 ggaatggtgagaccacccattggatgattaaatccaaactcttcttcagc 338  Q
    ||||||||||| |||||| ||||||||| | ||||||||||||| |||||    
T  27508987 ggaatggtgaggccacccgttggatgatcatatccaaactcttcctcagc 27508938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27421923 - 27421963
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    |||||| ||||||||||| |||||||||||| |||||||||    
T  27421923 atcttcactgcaaggaattgtgagaccacccgttggatgat 27421963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 271 - 335
Target Start/End: Complemental strand, 27446300 - 27446236
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttc 335  Q
    |||| |||||| ||||||||||| | ||||||| ||||| |||||| | || |||||||||||||    
T  27446300 aaaacatcttcactgcaaggaatcgagagaccatccattcgatgatcatattcaaactcttcttc 27446236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 27468327 - 27468375
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    |||||||||||||||| |||||||| ||||||| | ||||||| |||||    
T  27468327 tgcaaggaatggtgaggccacccatgggatgatcatatccaaattcttc 27468375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 340
Target Start/End: Original strand, 27497322 - 27497378
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    |||||||||||||||| |||||  | ||||||| | ||||||||||||| |||||||    
T  27497322 tgcaaggaatggtgaggccacctgtgggatgatcatatccaaactcttcctcagctt 27497378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 27500331 - 27500391
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcag 337  Q
    ||||||||||||||||| ||||  |||||||||||||| | | |||| |||| ||||||||    
T  27500331 tcttctctgcaaggaatagtgatgccacccattggatggtcatatccgaactgttcttcag 27500391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 27540155 - 27540115
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    |||||| |||||||||||||| || ||||||||||||||||    
T  27540155 atcttcactgcaaggaatggttagtccacccattggatgat 27540115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 340
Target Start/End: Original strand, 27556371 - 27556435
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctt 340  Q
    |||||| ||||| ||||| |||||||||||||| | ||||| | ||||||| |||||||| ||||    
T  27556371 atcttcactgcatggaattgtgagaccacccatagaatgatcatatccaaattcttcttctgctt 27556435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 276 - 386
Target Start/End: Complemental strand, 1754836 - 1754726
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaag 375  Q
    ||||||| ||||| |||||||||| |||||||||||||||| | |||||||||||||  |||||| ||  | |||   |||||| |  ||||||| ||||    
T  1754836 atcttctgtgcaaagaatggtgaggccacccattggatgatcatatccaaactcttccgcagcttgactcaacaaggattgaaacgatggttgattcaag 1754737  T
Q  376 tatgatattgg 386  Q
    |||||||||||    
T  1754736 tatgatattgg 1754726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 386
Target Start/End: Original strand, 1756757 - 1756859
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatgatat 383  Q
    |||||||||||||||| |||||||| || |||| | ||||||| ||||||||||||| ||  | ||| | |||||| |  ||||| | ||||||||||||    
T  1756757 tgcaaggaatggtgaggccacccatggggtgatcatatccaaattcttcttcagcttgactcaacaagtattgaaacgatggttggttcaagtatgatat 1756856  T
Q  384 tgg 386  Q
    |||    
T  1756857 tgg 1756859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 314
Target Start/End: Complemental strand, 1759399 - 1759362
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatg 314  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1759399 tcttctctgcaaagaatggtgagaccacccattggatg 1759362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 1754236 - 1754316
Alignment:
Q  279 ttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaa 359  Q
    |||||| |||||||| |||||||||||||| ||||||| | || |||||| ||| |||| |||   |||||||| ||||||    
T  1754236 ttctctacaaggaatagtgagaccacccatcggatgatcatattcaaactgttcctcagatttgtttagcaatttttgaaa 1754316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 339
Target Start/End: Original strand, 55088044 - 55088106
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagct 339  Q
    |||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||||    
T  55088044 tcttctttgcatggaatagtgagaccacccattggatgattgaaaccaaactcttcctcagct 55088106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 277 - 316
Target Start/End: Original strand, 50904785 - 50904824
Alignment:
Q  277 tcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50904785 tcttctctgcaaggaatggtgaggccacccattggatgat 50904824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 48840699 - 48840759
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactctt 331  Q
    |||| ||||||| |||||||||| ||||| |||||||||||||||| | ||||||| ||||    
T  48840699 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattctt 48840759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 50910108 - 50910052
Alignment:
Q  276 atcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    ||||||| |||||||||| ||||| |||||||||||||||| | ||||||| |||||    
T  50910108 atcttctgtgcaaggaattgtgaggccacccattggatgatcatatccaaattcttc 50910052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 38024862 - 38024923
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    ||||| |||||| |||||||||| ||||| ||||||||||| |||| | ||||||| |||||    
T  38024862 aaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38024923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 38031314 - 38031375
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    ||||| |||||| |||||||||| ||||| ||||||||||| |||| | ||||||| |||||    
T  38031314 aaaatgtcttctgtgcaaggaatcgtgaggccacccattgggtgatcatatccaaattcttc 38031375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 55084939 - 55084894
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    |||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  55084939 aaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 55084894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 380
Target Start/End: Complemental strand, 38044043 - 38043947
Alignment:
Q  284 tgcaaggaatggtgagaccacccattggatgattaaatccaaactcttcttcagctttacctagcaattgttgaaaagcaggttgatgcaagtatga 380  Q
    |||||||||| ||||| || ||||||||||||| | ||||||| ||||| || |||| ||  ||||| | |||||| | || ||||| |||||||||    
T  38044043 tgcaaggaattgtgaggccgcccattggatgatcatatccaaattcttcctctgcttgactcagcaagtcttgaaacgaagtttgattcaagtatga 38043947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 20903115 - 20903010
Alignment:
Q  66 ttcatataatgcataccctatgtt-----attctacacgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgtt 160  Q
    ||||||||||||||  ||||||||     |||||||| |||| |||| |||||||||  || ||||||| |||| ||| |||||||||||||||||||||    
T  20903115 ttcatataatgcatgacctatgttgttcaattctacatgctttaaagtagaatggcttatatagttctattcatatttgaccctgcatagtccatttgtt 20903016  T
Q  161 gaaatg 166  Q
    | ||||    
T  20903015 gtaatg 20903010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 21607283 - 21607344
Alignment:
Q  271 aaaatatcttctctgcaaggaatggtgagaccacccattggatgattaaatccaaactcttc 332  Q
    |||||||||||| |||||||||  ||||| ||||||||||| |||| | ||||||| |||||    
T  21607283 aaaatatcttctgtgcaaggaaccgtgaggccacccattgggtgatcatatccaaattcttc 21607344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 3073723 - 3073677
Alignment:
Q  270 aaaaatatcttctctgcaaggaatggtgagaccacccattggatgat 316  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||    
T  3073723 aaaaacatcttctgtgcaaggaattgtgaggccacccattggatgat 3073677  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 166
Target Start/End: Original strand, 29309402 - 29309478
Alignment:
Q  90 attctacacgcttcaaagcagaatggctactaaagttctagtcatctttaaccctgcatagtccatttgttgaaatg 166  Q
    |||||||| |||| |||| |||||||||  || |||| || || | ||||||||||||||||| |||||||| ||||    
T  29309402 attctacatgctttaaagtagaatggcttatagagttatattcgtatttaaccctgcatagtctatttgttgtaatg 29309478  T

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