View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_low_1 (Length: 646)

Name: NF14981_low_1
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_low_1
NF14981_low_1
[»] chr4 (4 HSPs)
chr4 (366-633)||(18979144-18979416)
chr4 (153-241)||(18979413-18979500)
chr4 (18-124)||(18979497-18979606)
chr4 (395-462)||(26370376-26370443)
[»] chr2 (2 HSPs)
chr2 (388-471)||(33797789-33797872)
chr2 (393-467)||(3324029-3324103)
[»] chr7 (1 HSPs)
chr7 (395-468)||(48817927-48818000)
[»] chr5 (1 HSPs)
chr5 (395-469)||(7683372-7683446)
[»] chr3 (2 HSPs)
chr3 (393-462)||(54548768-54548837)
chr3 (400-462)||(37972418-37972480)
[»] chr1 (2 HSPs)
chr1 (394-462)||(12390109-12390176)
chr1 (382-469)||(12555694-12555781)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 366 - 633
Target Start/End: Complemental strand, 18979416 - 18979144
Alignment:
Q  366 cttttgaaaatgaattaaaataaaaataaa-----ggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccat 460  Q
    ||||||||||||||||||||  ||||||||     ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18979416 cttttgaaaatgaattaaaaataaaataaaacaaaggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccat 18979317  T
Q  461 ggaaccattttattaccatttaccgacttaaactatctaaactaaaacaaacatatagttattgtttgtctttgaatannnnnnnnggattagacataaa 560  Q
    |||||| |||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||        ||||||||||||||    
T  18979316 ggaaccgttttgtatacatttaccgacttaaactatctaaactaaaacaaacatatagttattgtttgtctttcaatatattttttggattagacataaa 18979217  T
Q  561 aatgtatctaagataaacatgatgaattgaacaggttatggctgatctgttggcaccttggactgttcatctc 633  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18979216 aatgtatctaagataaacatgatgaattgaacaggttatggctgatctgttggcaccttggactgttcatctc 18979144  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 18979500 - 18979413
Alignment:
Q  153 gttggatttgaatcttgtacacctcacttattcaccataaaagataannnnnnnaccattaaactacttgaagaaaaacaagaaacttt 241  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  18979500 gttggatttgaaccttgtacacct-acttattcaccataaaagataatttttttaccattaaactacttgaagaaaaacaagaaacttt 18979413  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 18979606 - 18979497
Alignment:
Q  18 gatatataatatagaaaatatctacaaagtttaattaaagtcaaagtag---nnnnnnnnaatttaattaactaagatgttaatatggtcatgtaaaaat 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||| |||||||||||||||||||| |||||    
T  18979606 gatatataatatagaaaatatctacaaagtttaattaaagtcaaagtagaattttttttttatttaattaactcagatgttaatatggtcatgtgaaaat 18979507  T
Q  115 aactaagttg 124  Q
     ||| |||||    
T  18979506 tactcagttg 18979497  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 26370443 - 26370376
Alignment:
Q  395 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 462  Q
    |||| ||||||||| ||||| |||||||||  |||||||||||  |||||||||||||||||||||||    
T  26370443 aggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 26370376  T

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Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 33797789 - 33797872
Alignment:
Q  388 aaaataaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatttt 471  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33797789 aaaaaaaaggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccgtttt 33797872  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 393 - 467
Target Start/End: Complemental strand, 3324103 - 3324029
Alignment:
Q  393 aaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaacca 467  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3324103 aaaggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggacca 3324029  T

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Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 395 - 468
Target Start/End: Complemental strand, 48818000 - 48817927
Alignment:
Q  395 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccat 468  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48818000 aggttccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccat 48817927  T

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Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 395 - 469
Target Start/End: Complemental strand, 7683446 - 7683372
Alignment:
Q  395 aggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatt 469  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7683446 aggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgggaccatt 7683372  T

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Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 393 - 462
Target Start/End: Complemental strand, 54548837 - 54548768
Alignment:
Q  393 aaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 462  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  54548837 aaaggtcccaccgagacttgaactcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 54548768  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 400 - 462
Target Start/End: Complemental strand, 37972480 - 37972418
Alignment:
Q  400 ccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 462  Q
    ||||||||| ||||| |||||||||  |||||||||||  |||||||||||||||||||||||    
T  37972480 ccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgg 37972418  T

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Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 394 - 462
Target Start/End: Complemental strand, 12390176 - 12390109
Alignment:
Q  394 aaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatgg 462  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  12390176 aaggtcccaccgagacttgaactcgg-ttactggattcagagtccaatgtcctaaccgctagaccatgg 12390109  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 382 - 469
Target Start/End: Complemental strand, 12555781 - 12555694
Alignment:
Q  382 aaaataaaaataaaggttccaccgagacttgaaatcgggttactggattcagagtccaatgtcctaaccgctagaccatggaaccatt 469  Q
    |||||||||| |||||| ||||||||| ||||| |||||||||  |||||||||||  ||||||||||||||||||||||| ||||||    
T  12555781 aaaataaaaaaaaaggtcccaccgagaattgaactcgggttaccagattcagagtctgatgtcctaaccgctagaccatgggaccatt 12555694  T

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