View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14981_low_10 (Length: 372)
Name: NF14981_low_10
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 29621990 - 29621635
Alignment:
| Q |
1 |
attcaattacacttttaactatacttggtatttgaaaaacaacaaaaaa-ctatactttgtacatcacaacatgtgaaagtattagtttaattaattttc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621990 |
attcaattacacttttaactatacttggtatttgaaaaacaacaaaaaaactatactttgtacatcacaacatgtgaaagtattagtttaattaattttc |
29621891 |
T |
|
| Q |
100 |
ttaaaagaaataaaactgtacctatagaggagaaaagcatgattaattaaatttgctcactcctttttatgagatctaaaattgcatttgctttcctttg |
199 |
Q |
| |
|
| ||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621890 |
tgaaaagaaataaaactttacctatagaggaagtgaacatgattaattaaatttgctcactcctttttatgagatctaaaattgcatttgctttcctttg |
29621791 |
T |
|
| Q |
200 |
tgctctattagtaccactttctttaatctcaatcaaatgctcataaactccaaactgaagtgctgccaaagtaaaagatgaattacttgaacacaattca |
299 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621790 |
tgctctatttgtaccactttctttaatctcaatcaaatgttcataaactccaaactgaagtgctgccaaagtaaaagatgaattacttgaacacaattca |
29621691 |
T |
|
| Q |
300 |
agaagaacagaagctgcacattctttgttctttggagtcccttctctagtaaactc |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29621690 |
agaagaacagaagctgcacattctttgttctttggagtcccttctctagtaaactc |
29621635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University