View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_11 (Length: 355)
Name: NF14981_low_11
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_11 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 32210 - 32537
Alignment:
| Q |
13 |
cataggtaaatctggaataattccgttaaattccatttgtcttgaaagagaaagaacagtggggtagtggttcttggtcttaacaatgaaagataaaatc |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
32210 |
cataagtaaatctggaataattccgttaaattccatttgtcttgaaagagaaagaacagtggtgtagtggttcttggtcttaacaatggaagataaaatc |
32309 |
T |
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| Q |
113 |
ttggtgaattcaacaatggttgtagtatgacgcattcggagcatgcaattgaacgccaaaacagcattatcaacttcaaaatcattgggaatggatctaa |
212 |
Q |
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| T |
32310 |
cttgtgaattcaacaatggttgtagtatgacgcattcggagcatgcaattgaatgccaaaacaacattatcaacttcaaaatcattgggaatggatctaa |
32409 |
T |
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| Q |
213 |
agtgagagtaaaatcataacggtaagggtgagcgtgaatttgagtgatttaataaagaagaataaagaaacctgaagcttgaaaacaacattggagcgtc |
312 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32410 |
agtgagagtaaaatcataacggtaagggtgaacgtgaatttgagtgatttaataaagaagaataaagaaacctgaagcttgaaaacaacattggagcgtc |
32509 |
T |
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| Q |
313 |
tagttgtgattgagggaatggaaaaagt |
340 |
Q |
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| T |
32510 |
tagttgtgattgagggaatggaaaaagt |
32537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 42 - 279
Target Start/End: Complemental strand, 16350115 - 16349878
Alignment:
| Q |
42 |
attccatttgtcttgaaagagaaagaacagtggggtagtggttcttggtcttaacaatgaaagataaaatcttggtgaattcaacaatggttgtagtatg |
141 |
Q |
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| T |
16350115 |
attccatctgtgtggaaagggaaagaacagtggggtagtggttcttagtcttaataaggtatgttaagatcttattgaattcaacaatggatggagtctg |
16350016 |
T |
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| Q |
142 |
acgcattcggagcatgcaattgaacgccaaaacagcattatcaacttcaaaatcattgggaatggatctaaagtgagagtaaaatcataacggtaagggt |
241 |
Q |
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| T |
16350015 |
acgaatttggcgcatgcgattgaacgacaaaacagcattatcaacaacaaaaccattgggaatggatctaaagtgagagtaaaatcataacggtaagggt |
16349916 |
T |
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| Q |
242 |
gagcgtgaatttgagtgatttaataaagaagaataaag |
279 |
Q |
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| T |
16349915 |
gaacgtgaatttgagtgatttaataacgaagaataaag |
16349878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 117 - 279
Target Start/End: Complemental strand, 16411088 - 16410926
Alignment:
| Q |
117 |
tgaattcaacaatggttgtagtatgacgcattcggagcatgcaattgaacgccaaaacagcattatcaacttcaaaatcattgggaatggatctaaagtg |
216 |
Q |
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| T |
16411088 |
tgaattcaacaatggatggagtctgacgaatttggcgcatgcgattgaacgacaaaacagcattatcaacaacaaaaccattgggaatggatctaaagtg |
16410989 |
T |
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| Q |
217 |
agagtaaaatcataacggtaagggtgagcgtgaatttgagtgatttaataaagaagaataaag |
279 |
Q |
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| T |
16410988 |
agagtaaaatcataacggtaagggtgaacgtgaatttgagtgatttaataacgaagaataaag |
16410926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 16349863 - 16349798
Alignment:
| Q |
270 |
aagaataaagaaacctgaagcttgaaaacaacattggagcgtctagttgtgattgagggaatggaa |
335 |
Q |
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| T |
16349863 |
aagaagaaataaaccttaaacttgaaaacaacattggagcgactagttgtgattgaggaaatggaa |
16349798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 335
Target Start/End: Complemental strand, 16410911 - 16410846
Alignment:
| Q |
270 |
aagaataaagaaacctgaagcttgaaaacaacattggagcgtctagttgtgattgagggaatggaa |
335 |
Q |
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| T |
16410911 |
aagaagaaataaaccttaaacttgaaaacaacattggagcgactagttgtgattgaggaaatggaa |
16410846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 16702952 - 16703129
Alignment:
| Q |
42 |
attccatttgtcttgaaagagaaagaacagtggggtagtggttcttggtcttaacaatgaaagataaaatcttggtgaattcaacaatggttgtagtatg |
141 |
Q |
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| T |
16702952 |
attccatctgtgtggaaagggaaagaacagtggggtagtggttcttagtcttaataaggtatgttaagatcttattgaattcaacaatggatggagtatg |
16703051 |
T |
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| Q |
142 |
acgcattcggagcatgcaattgaacgccaaaacagcattatcaacttcaaaatcattgggaatggatctaaagtgaga |
219 |
Q |
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| T |
16703052 |
acgcatttggagcatgcgattgaacgacaaaacagcattatcaacaacaaaaccattgggaatggatctaaagtgaga |
16703129 |
T |
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