View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_low_16 (Length: 322)

Name: NF14981_low_16
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_low_16
NF14981_low_16
[»] chr7 (13 HSPs)
chr7 (104-322)||(7298685-7298902)
chr7 (104-322)||(40521014-40521230)
chr7 (109-322)||(46567960-46568172)
chr7 (106-296)||(16979492-16979681)
chr7 (106-277)||(28948895-28949069)
chr7 (187-277)||(47478436-47478526)
chr7 (106-172)||(40521214-40521280)
chr7 (106-175)||(7298635-7298704)
chr7 (104-176)||(19805608-19805680)
chr7 (132-172)||(46568156-46568196)
chr7 (106-172)||(19804797-19804863)
chr7 (272-322)||(19805578-19805628)
chr7 (112-161)||(47478367-47478415)
[»] chr8 (14 HSPs)
chr8 (104-322)||(2814241-2814458)
chr8 (106-322)||(14193373-14193588)
chr8 (104-322)||(41539820-41540036)
chr8 (106-322)||(397007-397219)
chr8 (106-175)||(2814439-2814508)
chr8 (105-176)||(41539769-41539840)
chr8 (104-175)||(397200-397271)
chr8 (106-176)||(37994902-37994972)
chr8 (104-172)||(14193322-14193389)
chr8 (106-176)||(37994708-37994778)
chr8 (104-176)||(44036812-44036884)
chr8 (275-322)||(37994875-37994922)
chr8 (122-172)||(25101746-25101796)
chr8 (275-316)||(44036981-44037022)
[»] chr6 (9 HSPs)
chr6 (104-322)||(21389071-21389287)
chr6 (118-322)||(7789679-7789884)
chr6 (106-175)||(21389021-21389090)
chr6 (107-176)||(33022362-33022431)
chr6 (107-175)||(7789865-7789933)
chr6 (105-176)||(33022163-33022234)
chr6 (107-174)||(28472557-28472624)
chr6 (107-174)||(29859746-29859813)
chr6 (275-322)||(33022335-33022382)
[»] chr5 (43 HSPs)
chr5 (106-322)||(5146504-5146717)
chr5 (14-175)||(5146698-5146859)
chr5 (106-322)||(35454451-35454664)
chr5 (104-322)||(13823148-13823362)
chr5 (187-322)||(33377725-33377862)
chr5 (104-322)||(6518253-6518468)
chr5 (200-322)||(228767-228889)
chr5 (109-273)||(19897228-19897391)
chr5 (106-175)||(33377843-33377912)
chr5 (192-322)||(40881905-40882033)
chr5 (187-272)||(27319558-27319643)
chr5 (108-176)||(8323902-8323970)
chr5 (104-176)||(26534692-26534764)
chr5 (187-254)||(228888-228955)
chr5 (106-176)||(791592-791662)
chr5 (106-167)||(6518203-6518264)
chr5 (257-322)||(40881840-40881905)
chr5 (104-175)||(8489121-8489192)
chr5 (104-175)||(35454645-35454715)
chr5 (104-174)||(14069859-14069928)
chr5 (106-176)||(26534506-26534576)
chr5 (106-175)||(13823343-13823412)
chr5 (106-175)||(14388515-14388583)
chr5 (106-171)||(19898953-19899018)
chr5 (118-174)||(228729-228785)
chr5 (105-176)||(130253-130324)
chr5 (263-322)||(8489173-8489232)
chr5 (106-176)||(130442-130512)
chr5 (106-176)||(8323707-8323777)
chr5 (123-174)||(40882015-40882066)
chr5 (106-175)||(40881792-40881859)
chr5 (106-172)||(42630711-42630777)
chr5 (104-176)||(42630901-42630973)
chr5 (109-167)||(228987-229044)
chr5 (115-169)||(27319668-27319722)
chr5 (106-163)||(791810-791867)
chr5 (281-322)||(19898927-19898968)
chr5 (275-322)||(791642-791689)
chr5 (275-322)||(8323875-8323922)
chr5 (275-322)||(26534665-26534712)
chr5 (275-322)||(130415-130462)
chr5 (275-322)||(42630874-42630921)
chr5 (109-174)||(27319482-27319546)
[»] chr2 (28 HSPs)
chr2 (106-322)||(38085967-38086181)
chr2 (107-322)||(3671822-3672037)
chr2 (106-322)||(31470636-31470841)
chr2 (102-175)||(15332857-15332930)
chr2 (104-176)||(36059281-36059353)
chr2 (212-293)||(15330504-15330586)
chr2 (106-176)||(42028578-42028648)
chr2 (104-176)||(13280029-13280101)
chr2 (106-176)||(16115046-16115116)
chr2 (106-172)||(16115242-16115308)
chr2 (106-176)||(42028772-42028842)
chr2 (106-175)||(31470587-31470655)
chr2 (106-175)||(31860079-31860148)
chr2 (106-175)||(38086162-38086231)
chr2 (104-176)||(7317633-7317705)
chr2 (104-172)||(7317833-7317901)
chr2 (104-172)||(31860283-31860351)
chr2 (105-176)||(2059678-2059749)
chr2 (106-167)||(13279840-13279901)
chr2 (106-172)||(2059490-2059556)
chr2 (106-175)||(3672018-3672087)
chr2 (106-163)||(15330449-15330505)
chr2 (275-322)||(42028628-42028675)
chr2 (290-322)||(15332844-15332876)
chr2 (275-322)||(2059651-2059698)
chr2 (275-322)||(13280002-13280049)
chr2 (275-322)||(16115096-16115143)
chr2 (275-322)||(31860252-31860299)
[»] chr4 (19 HSPs)
chr4 (104-322)||(18936674-18936891)
chr4 (187-322)||(37177705-37177840)
chr4 (187-322)||(11147064-11147204)
chr4 (105-175)||(11147013-11147083)
chr4 (104-172)||(5121005-5121073)
chr4 (104-176)||(40533961-40534033)
chr4 (106-176)||(3102734-3102804)
chr4 (106-176)||(40534157-40534227)
chr4 (104-176)||(3102538-3102610)
chr4 (104-172)||(18381507-18381575)
chr4 (104-175)||(37177821-37177892)
chr4 (105-175)||(18936872-18936942)
chr4 (107-176)||(13690216-13690285)
chr4 (106-176)||(9231580-9231650)
chr4 (275-322)||(3102707-3102754)
chr4 (125-168)||(9231782-9231825)
chr4 (275-322)||(40534130-40534177)
chr4 (104-175)||(11147220-11147290)
chr4 (287-322)||(18381488-18381523)
[»] chr1 (31 HSPs)
chr1 (118-322)||(23346469-23346672)
chr1 (106-322)||(50893013-50893226)
chr1 (106-318)||(4156892-4157103)
chr1 (106-318)||(42180571-42180782)
chr1 (106-322)||(41833924-41834139)
chr1 (106-278)||(48871247-48871418)
chr1 (104-322)||(7062057-7062262)
chr1 (104-278)||(28217528-28217700)
chr1 (197-322)||(39669149-39669272)
chr1 (106-233)||(48752532-48752657)
chr1 (105-175)||(23346418-23346488)
chr1 (106-175)||(50892963-50893032)
chr1 (104-172)||(28217717-28217785)
chr1 (106-167)||(48871440-48871501)
chr1 (104-172)||(10227910-10227978)
chr1 (106-176)||(10227712-10227782)
chr1 (118-176)||(19059386-19059444)
chr1 (107-175)||(50905107-50905175)
chr1 (107-174)||(39669254-39669321)
chr1 (106-176)||(26552186-26552256)
chr1 (263-319)||(50905046-50905102)
chr1 (133-175)||(7062034-7062076)
chr1 (106-175)||(41833874-41833943)
chr1 (107-175)||(50904992-50905062)
chr1 (108-176)||(26551992-26552060)
chr1 (275-322)||(10227762-10227809)
chr1 (118-172)||(19059576-19059630)
chr1 (281-322)||(28217692-28217733)
chr1 (281-322)||(48871410-48871451)
chr1 (136-172)||(42180770-42180806)
chr1 (275-322)||(26552159-26552206)
[»] chr3 (18 HSPs)
chr3 (109-322)||(36635241-36635452)
chr3 (187-322)||(19580389-19580524)
chr3 (106-175)||(36635433-36635502)
chr3 (104-171)||(19580509-19580576)
chr3 (105-176)||(33214442-33214513)
chr3 (113-176)||(36274126-36274189)
chr3 (106-176)||(27073102-27073172)
chr3 (104-176)||(36274319-36274391)
chr3 (105-176)||(33214633-33214704)
chr3 (108-176)||(10598810-10598878)
chr3 (106-169)||(33219072-33219135)
chr3 (106-168)||(10599000-10599062)
chr3 (105-167)||(27072912-27072974)
chr3 (106-169)||(11651000-11651063)
chr3 (275-322)||(27073075-27073122)
chr3 (275-322)||(33214493-33214540)
chr3 (275-322)||(36274169-36274216)
chr3 (263-304)||(11651068-11651109)
[»] scaffold0140 (1 HSPs)
scaffold0140 (105-301)||(15846-16044)
[»] scaffold0214 (3 HSPs)
scaffold0214 (106-176)||(11821-11891)
scaffold0214 (118-172)||(11638-11692)
scaffold0214 (275-322)||(11676-11723)
[»] scaffold0135 (2 HSPs)
scaffold0135 (106-176)||(37446-37516)
scaffold0135 (125-168)||(37648-37691)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 6e-74; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 7298902 - 7298685
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||            |||||||||||||||||    
T  7298902 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacataacacgtatttttttttttcttttaaccatgattgg 7298804  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  7298803 tggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaacaatg 7298704  T
Q  304 acgtgtcatgttttaattt 322  Q
    |||||||||||||||||||    
T  7298703 acgtgtcatgttttaattt 7298685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 104 - 322
Target Start/End: Original strand, 40521014 - 40521230
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||           |||||||||||||||||    
T  40521014 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgacacgtcataatttttttcttttaaccatgattgg 40521112  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    | ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  40521113 tagtggtgaatactaaccgcaaataatggttgagagagaggaggagcagtta-ttttcatttattaaattatttcctaattattttaaaataaaacaatg 40521211  T
Q  304 acgtgtcatgttttaattt 322  Q
    | |||||||||||||||||    
T  40521212 atgtgtcatgttttaattt 40521230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 46567960 - 46568172
Alignment:
Q  109 aaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtggtg 208  Q
    ||||| || ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||           |||||||| ||||||||||||     
T  46567960 aaattcttgtgtaggaacgaacttaac-tatcattcttacaaacaacaaattaaaacatgacacgtcattttatttttcttttaactatgattggtggta 46568058  T
Q  209 gtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgacgtg 308  Q
    |||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||||||| |||    
T  46568059 gtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttattaaattatttcctaattatttttaaataaaacaatgatgtg 46568158  T
Q  309 tcatgttttaattt 322  Q
    ||||||||||||||    
T  46568159 tcatgttttaattt 46568172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 106 - 296
Target Start/End: Complemental strand, 16979681 - 16979492
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||           ||||||||||| |||||||    
T  16979681 gagaaattcttgtgtaggaacgaatctaac-tatcattcttacaaataacaaattaaaacatgacacgtcattttttttttcttttaaccataattggtg 16979583  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataa 296  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||    
T  16979582 gtggtgaatactaactgcagataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataa 16979492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 106 - 277
Target Start/End: Complemental strand, 28949069 - 28948895
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnn--cttttaaccatgattgg 203  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||             |||||||||||||||||    
T  28949069 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgtcattttttttctttcttttaaccatgattgg 28948971  T
Q  204 tggtggtgaatactaactgccaataatggtt--gagagagaggaggagcagttagttttcttttcttaaattattt 277  Q
    ||||||||||||||||| || ||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||    
T  28948970 tggtggtgaatactaaccgcaaataatggttcagagagagaggaggagcagttatttttcatttcttaaattattt 28948895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 277
Target Start/End: Original strand, 47478436 - 47478526
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattt 277  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||||||||||||    
T  47478436 cttttaaccatgattgatggtggtgaatactaactgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattattt 47478526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 40521280 - 40521214
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40521280 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 40521214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 7298635 - 7298704
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7298635 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtc 7298704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 19805680 - 19805608
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || ||||||||||||| |||| |||||| |||| ||| ||||||||||||||||||||||||    
T  19805680 aagagaaattcttgtgtaggaacgaacttaacctatcatccttataaataacaaattaaaacatgacacgtcg 19805608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 46568196 - 46568156
Alignment:
Q  132 taacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46568196 taacatatcattcttacaaacaacaaattaaaacatgacac 46568156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 19804797 - 19804863
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||| || |||||||||||||||||| ||| || ||||||||||||||||| ||||| |||||    
T  19804797 gagaaattcttgtgtaggaacgaacctaacctattatccttacaaacaacaaattgaaacacgacac 19804863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 19805578 - 19805628
Alignment:
Q  272 ttattttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||| |||||||||||||| ||| ||| ||||||||||||||||||||    
T  19805578 ttattttataattattttaaaagaaagcaacgacgtgtcatgttttaattt 19805628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 47478367 - 47478415
Alignment:
Q  112 tttttatgtaggaacgaacctaacatatcattcttacaaacaacaaatta 161  Q
    ||||| ||||| ||||||| |||| |||||||||||||||||||||||||    
T  47478367 tttttgtgtagaaacgaacttaac-tatcattcttacaaacaacaaatta 47478415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 104 - 322
Target Start/End: Original strand, 2814241 - 2814458
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||          |||||||||||||||||    
T  2814241 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaatcatgacacgtcgttttttttttcttttaaccatgattgg 2814339  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| ||||||||||| ||| |||||||||    
T  2814340 tggtggtgaatactaaccgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttcctaattatttttaaaaaaaacaatg 2814439  T
Q  304 acgtgtcatgttttaattt 322  Q
    |||||||||||||||||||    
T  2814440 acgtgtcatgttttaattt 2814458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 14193588 - 14193373
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  14193588 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatttttttcttcttttaaccatgattggtg 14193490  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||||||||| |||||||||||||||||||||||| || ||| ||||| ||||||||||||||| | ||||||||||||||||||||||||     
T  14193489 gtggtgaatactaactgcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatgat 14193390  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  14193389 gtgtcatgttttaattt 14193373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 41540036 - 41539820
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||          ||||||| |||||||||    
T  41540036 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgttttatttt-cttttaatcatgattgg 41539939  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    |||||||||||||||||||| ||||||||||||||||||| |||| |||||| ||||| |||||||||||||||   ||||||||||||||||||||| |    
T  41539938 tggtggtgaatactaactgcaaataatggttgagagagagaaggaacagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaacg 41539839  T
Q  304 acgtgtcatgttttaattt 322  Q
    ||||||||| |||||||||    
T  41539838 acgtgtcatattttaattt 41539820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 397007 - 397219
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || || ||||||||||||||| |||||||||||||||||| |||||||||||| |||||| |          |||||||||||||||||||    
T  397007 gagaaattcttgtgcaggaacgaacctaac-tatcattcttacaaacaataaattaaaacataacacgttgttttttttt-cttttaaccatgattggtg 397104  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    ||||||||||||||| || ||||||||||||||  ||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  397105 gtggtgaatactaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgac 397202  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  397203 gtgtcatgttttaattt 397219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 2814508 - 2814439
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2814508 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 2814439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 41539769 - 41539840
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41539769 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaatatgacacgtcg 41539840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 397271 - 397200
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||| || ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  397271 aagagaaattcttgtgtagaaacgaacctaacatatcattcttataaacaacaaattaaaacatgacacgtc 397200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 37994972 - 37994902
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||    
T  37994972 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacacgtcg 37994902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 14193322 - 14193389
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    ||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  14193322 aagagaaatttttgt-taggaacgaacctaacatattatttttacaaacaacaaattaaaacatgacac 14193389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 37994708 - 37994778
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||| |||||||||||||| ||||||    
T  37994708 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgatacgtcg 37994778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 44036812 - 44036884
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||||  | |||||| ||||||||||| |||||| ||||||||||||||||| |||||||||||||||    
T  44036812 aagagaaattcatgtgtagggacgaacctaacctatcatccttacaaacaacaaattcaaacatgacacgtcg 44036884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 37994875 - 37994922
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  37994875 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 37994922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 25101746 - 25101796
Alignment:
Q  122 ggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||||||| |||||||||| ||||||||||| ||||| |||||||    
T  25101746 ggaacgaacctaacctatcattcttgcaaacaacaaaataaaatatgacac 25101796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 44036981 - 44037022
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttt 316  Q
    |||| |||||||||||||| ||||||| ||||||||||||||    
T  44036981 ttttataattattttaaaagaaaacaacgacgtgtcatgttt 44037022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 21389287 - 21389071
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||    
T  21389287 aagataaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc-atttttttttcttttaaccatgattgg 21389190  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  21389189 tggtggtgaatactaactgcaaataatggttgagagagaggaggagcatttatttttcatttcttaaattatttcctaattattttaaaataaaacaatg 21389090  T
Q  304 acgtgtcatgttttaattt 322  Q
    |||| ||||||||||||||    
T  21389089 acgtatcatgttttaattt 21389071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 118 - 322
Target Start/End: Original strand, 7789679 - 7789884
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnn--cttttaaccatgattggtggtggtgaata 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||             |||||||||||||||||||||||||||||    
T  7789679 tgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacatgtcattgtttttttttcttttaaccatgattggtggtggtgaata 7789777  T
Q  216 ctaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgacgtgtcatgtt 315  Q
    |||||||| ||||||||||||||||||||||||||| ||| ||||  ||||||||||||||| |||||||||||  || |||||||||||||||||||||    
T  7789778 ctaactgcaaataatggttgagagagaggaggagcaattattttttatttcttaaattatttcctaattattttttaaaaaaacaatgacgtgtcatgtt 7789877  T
Q  316 ttaattt 322  Q
    |||||||    
T  7789878 ttaattt 7789884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 21389021 - 21389090
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21389021 gagaaattcttctgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 21389090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 33022431 - 33022362
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33022431 agaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 33022362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 7789933 - 7789865
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7789933 agaaattcttgtgtaggaatgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 7789865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 33022163 - 33022234
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  33022163 agagaaattattgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 33022234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 28472624 - 28472557
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||    
T  28472624 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgt 28472557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 29859813 - 29859746
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| ||| ||||||    
T  29859813 agaaatttttatgtaggaacgaacctaatatatcatttttataaacaacaaattaaatcataacacgt 29859746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 33022335 - 33022382
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  33022335 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 33022382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 5146504 - 5146717
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||            |||||||||||||||||||    
T  5146504 gagaaattattgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacacgt--tattttttttcttttaaccatgattggtg 5146600  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  5146601 gtggtgaatactaactgcaaataatggttgagagagaggaggaggagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgac 5146700  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  5146701 gtgtcatgttttaattt 5146717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 5146859 - 5146698
Alignment:
Q  14 atatactcatccatttttcccccaccctaggaagtgagaaagacagagaaccatcgtgaatgagtggagccacatgggacgtacaacttgaagagaaatt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  5146859 atatactcatccatttttcccccaccctaggaagtgagaaagacagagaaccatcgagaatgagtggagccacatgggacgtacaacatcaagagaaatt 5146760  T
Q  114 tttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
     || ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5146759 cttgtgtagaaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 5146698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 35454451 - 35454664
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  35454451 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc--attttttttcttttaaccatgattggtg 35454547  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| | ||||||||| || ||||||||||||    
T  35454548 gtggtgaatactaactgcaaataatggttgagagagaggacgagcagttatttttcatttcttaaattatttccaaattatttttaactaaaacaatgac 35454647  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  35454648 gtgtcatgttttaattt 35454664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 322
Target Start/End: Original strand, 13823148 - 13823362
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||||||||||||||||| |||||||| || |||||| ||| |||||||||||||||            |||||||||||||||||    
T  13823148 aagagaaattcttgtgtaggaacgaacctaac-tatcattcgtataaacaataaactaaaacatgacacgt---attttttttcttttaaccatgattgg 13823243  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    |||||||||||||||| ||| |||||||||||||| |||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||    
T  13823244 tggtggtgaatactaagtgcaaataatggttgagaaagaggaggagcaattatttttcatttcttaaattatttcctaattattttaaaataaaacaatg 13823343  T
Q  304 acgtgtcatgttttaattt 322  Q
    |||||||||||||||||||    
T  13823344 acgtgtcatgttttaattt 13823362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 187 - 322
Target Start/End: Original strand, 33377725 - 33377862
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggag--gagcagttagttttcttttcttaaattattttctaatt 284  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| ||||  ||||||||||||||| ||||||    
T  33377725 cttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggagaggagcagttattttttatttcttaaattatttcctaatt 33377824  T
Q  285 attttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33377825 attttaaaataaaacaatgacgtgtcatgttttaattt 33377862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 6518468 - 6518253
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||| |||| || ||           |||||||||||||||||    
T  6518468 aagagaaattcttgtgtagtaacgaacctaac-tatcattcttacaaacaacaaattaaaatatgatacatc--atttttttccttttaaccatgattgg 6518372  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    ||||||||||||||||| || |||||||||||||||||||||||| || ||| ||||| ||||||||||||||| | |||||||||||||||||||||||    
T  6518371 tggtggtgaatactaacggcaaataatggttgagagagaggaggaacaattatttttcatttcttaaattatttccaaattattttaaaataaaacaatg 6518272  T
Q  304 acgtgtcatgttttaattt 322  Q
    || ||  ||||||||||||    
T  6518271 acatgcaatgttttaattt 6518253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 200 - 322
Target Start/End: Complemental strand, 228889 - 228767
Alignment:
Q  200 ttggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaac 299  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  228889 ttggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagcagttagttttcatttcttaaattatttcctaattattttaaaataaaac 228790  T
Q  300 aatgacgtgtcatgttttaattt 322  Q
    ||| |||||||||||||||||||    
T  228789 aataacgtgtcatgttttaattt 228767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 109 - 273
Target Start/End: Original strand, 19897228 - 19897391
Alignment:
Q  109 aaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtggtg 208  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  19897228 aaattattgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtcatattttttctcttttaaccatgattggtggtg 19897326  T
Q  209 gtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaatt 273  Q
    ||||||||||||||| |||||||||||||||||||||||| || ||| ||||| |||||||||||    
T  19897327 gtgaatactaactgcaaataatggttgagagagaggaggaacatttatttttcatttcttaaatt 19897391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 33377912 - 33377843
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33377912 gagaaattcttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 33377843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 192 - 322
Target Start/End: Original strand, 40881905 - 40882033
Alignment:
Q  192 aaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaa 291  Q
    |||||| ||||||||||| |||||||||| |  | ||||||||||||||||  ||||| ||||  ||| | ||||||||||||||| | |||||||||||    
T  40881905 aaccattattggtggtggcgaatactaaccgtaagtaatggttgagagaga--aggagtagttgttttccatttcttaaattatttccaaattattttaa 40882002  T
Q  292 aataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||| ||||||||| |||||||||    
T  40882003 aataaaacaataacgtgtcatattttaattt 40882033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 27319558 - 27319643
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaat 272  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||| ||| ||||| ||||||||||    
T  27319558 cttttaaccatgattggtggtggtgaatcctagctgcaaataatggttgagagagaggagaagcaattatttttcatttcttaaat 27319643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8323970 - 8323902
Alignment:
Q  108 gaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8323970 gaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 8323902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 26534764 - 26534692
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  26534764 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 26534692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 228955 - 228888
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagtt 254  Q
    |||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  228955 cttttaaccatgattggtggtggtgaataccaaccgcaaataatggttgagagagaggaggagcagtt 228888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 791592 - 791662
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  791592 gagaaatttttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcg 791662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 6518203 - 6518264
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 167  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6518203 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 6518264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 257 - 322
Target Start/End: Complemental strand, 40881905 - 40881840
Alignment:
Q  257 ttttcttttcttaaattattttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  40881905 ttttcatttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatgttttaattt 40881840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 175
Target Start/End: Original strand, 8489121 - 8489192
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||| || ||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||    
T  8489121 aagagaaattcttgtgtaggaacaaatctaacatatcattcttacaaacaacaaattaaaatatgacacgtc 8489192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 35454715 - 35454645
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||| ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35454715 aagaaaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 35454645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 14069859 - 14069928
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    |||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  14069859 aagagaaattcttgtgtaggaacgaacctaac-tatcattcttataaacaacaaattaaaacatgacacgt 14069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 26534506 - 26534576
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  26534506 gagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcg 26534576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 13823412 - 13823343
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || ||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  13823412 gagaaattcttgtgtaggaacgaacttaacatatcatttttacaaataacaaattaaaacatgacacgtc 13823343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 14388583 - 14388515
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  14388583 gagaaattcttgtgtaggaacaaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc 14388515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 19899018 - 19898953
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 171  Q
    |||||||| || |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  19899018 gagaaattcttgtgtaggaacgaacctaacatatcatttttataaacaacaaattaaaacatgaca 19898953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 228729 - 228785
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  228729 tgtaggaacgaacctaacatatcattcttataaacaataaattaaaacatgacacgt 228785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 130253 - 130324
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || |||||||||||||||||| | |||  |||||||||||||||||||||||||||||||||    
T  130253 agagaaattcttgtgtaggaacgaacctaacctgtcaaccttacaaacaacaaattaaaacatgacacgtcg 130324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 322
Target Start/End: Complemental strand, 8489232 - 8489173
Alignment:
Q  263 tttcttaaattattttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  8489232 tttcttaaattatttccaaattattttaaaataaaacaatgacgtgtcatattttaattt 8489173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 130512 - 130442
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  130512 gagaaattcttttgtagtaacgaacctaacctatcatccttacaaacaacaaattaaaacataacacgtcg 130442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 8323707 - 8323777
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||    
T  8323707 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaataaattaaaacatgacacgtcg 8323777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 40882066 - 40882015
Alignment:
Q  123 gaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  40882066 gaacgaatctaacatatcattcttacaaacaacaaattaaaatatgacacgt 40882015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 40881792 - 40881859
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || ||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||    
T  40881792 gagaaattgttgtgtaggaacgaacctaacatt--attcttacaaacaataaattaaaacatgacacgtc 40881859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 42630711 - 42630777
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||| || |||| ||||||||||||| |||||| ||||||||||||||| |||||||||||||    
T  42630711 gagaaattcttgtgtatgaacgaacctaacctatcatccttacaaacaacaaactaaaacatgacac 42630777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 42630973 - 42630901
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||| ||||| || |||||| ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||    
T  42630973 aagaaaaattcttgtgtaggcacgaacctaacctatcatccttacaaacaataaattaaaatatgacacgtcg 42630901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 167
Target Start/End: Complemental strand, 229044 - 228987
Alignment:
Q  109 aaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 167  Q
    |||||||| ||||| ||||||| |||| |||||||||||||||||||||||||||||||    
T  229044 aaatttttgtgtagaaacgaacataac-tatcattcttacaaacaacaaattaaaacat 228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 27319722 - 27319668
Alignment:
Q  115 ttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatga 169  Q
    ||||| |||||| || |||||||||||||||||||||||||||||||||| ||||    
T  27319722 ttatggaggaaccaatctaacatatcattcttacaaacaacaaattaaaatatga 27319668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 791867 - 791810
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaa 163  Q
    |||||||| || |||||||||||||||||| ||||||  |||||||||||||||||||    
T  791867 gagaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaa 791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 19898927 - 19898968
Alignment:
Q  281 aattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  19898927 aattattttaaaataaaacaatgacatgtcatgttttaattt 19898968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 791689 - 791642
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  791689 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 791642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 8323875 - 8323922
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  8323875 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 8323922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 26534665 - 26534712
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  26534665 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 26534712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 130415 - 130462
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||| ||||||||||||    
T  130415 ttttataattattttaaaagaaaacaacgacgtgttatgttttaattt 130462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 42630874 - 42630921
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| |||||||||| |||||||||    
T  42630874 ttttataattattttaaaagaaaacaacgacgtgtcatattttaattt 42630921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 27319482 - 27319546
Alignment:
Q  109 aaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    |||||||| ||||| || |||| |||| ||||||||||||||| || |||||||||||||| ||||    
T  27319482 aaatttttgtgtagtaatgaacttaac-tatcattcttacaaataataaattaaaacatgatacgt 27319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 106 - 322
Target Start/End: Original strand, 38085967 - 38086181
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||    
T  38085967 gagaaattcttgtgtaggaacgaaactaac-tatcattcttacaaacaacaaattaaaacatgacacgtcgttttatttt-cttttaaccatgattggtg 38086064  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||   |||||||||||||||||||||||||    
T  38086065 gtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcaaaattattttaaaataaaacaatgac 38086164  T
Q  306 gtgtcatgttttaattt 322  Q
    || |||| |||||||||    
T  38086165 gtatcatattttaattt 38086181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 107 - 322
Target Start/End: Original strand, 3671822 - 3672037
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnn-cttttaaccatgattggtg 205  Q
    ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||            |||||||||||||||| ||    
T  3671822 agaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacatcattttttttcttcttttaaccatgattgatg 3671920  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||| ||||  | ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  3671921 gtggtgaatagtaaccacaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgac 3672020  T
Q  306 gtgtcatgttttaattt 322  Q
    |||| || |||||||||    
T  3672021 gtgttatattttaattt 3672037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 31470841 - 31470636
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||  ||||||| ||           |||||||||||||||||||    
T  31470841 gagaaatttttgtgtaggaacgaacctaac-tatcattcttacaaacaacaaattaaataatgacacatc--attttttttcttttaaccatgattggtg 31470745  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    ||||||||||         || ||||||||||||||||||| |||| ||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  31470744 gtggtgaataa--------aacaatggttgagagagaggagaagcaattatttttcatttcttaaattatttcctaattattttaaaataaaacaatgac 31470653  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  31470652 gtgtcatgttttaattt 31470636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 15332930 - 15332857
Alignment:
Q  102 tgaagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15332930 tgaagagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtc 15332857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 36059353 - 36059281
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36059353 aagagaaattcttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 36059281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 212 - 293
Target Start/End: Original strand, 15330504 - 15330586
Alignment:
Q  212 aatactaactgccaataatggttgagagagaggaggagcag-ttagttttcttttcttaaattattttctaattattttaaaa 293  Q
    |||||||||||| |||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||||||    
T  15330504 aatactaactgcaaataatggttgagagagaggaggagcagtttatttttcatttcttaaattatttcctaattattttaaaa 15330586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 42028578 - 42028648
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  42028578 gagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgacacgtcg 42028648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 13280101 - 13280029
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  13280101 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 13280029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 16115046 - 16115116
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||||| |||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  16115046 gagaaatttttgtgtaagaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 16115116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 16115308 - 16115242
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||    
T  16115308 gagaaatttttgtgtaggaacgaacctaacctatcattcttacaaacaacaaactaaaatatgacac 16115242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 42028842 - 42028772
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  42028842 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 42028772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 31470587 - 31470655
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  31470587 gagaaattcttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaacatgacacgtc 31470655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 31860079 - 31860148
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||    
T  31860079 gagaaattcttgtgtaggaacgaacctaacctatcatccttataaacaacaaattaaaacatgacacgtc 31860148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 38086231 - 38086162
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||    
T  38086231 gagaaatttttgtgtagggacaaacctaacatatcattcttacaaacaacaaattaaaatatgatacgtc 38086162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 7317633 - 7317705
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| |||| |||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||||    
T  7317633 aagagaaacttttgtgtaggaacgaacctaacctatcatccttactaacaacaaactaaaacatgacacgtcg 7317705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 7317901 - 7317833
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || |||||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  7317901 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaataaattaaaacatgacac 7317833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 31860351 - 31860283
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || |||||||||||||||||| || ||| |||||||||||||||||||||||||||||    
T  31860351 aagagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacac 31860283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 2059749 - 2059678
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || ||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  2059749 agagaaattattgtgttggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 2059678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 13279840 - 13279901
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 167  Q
    |||||||| || |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  13279840 gagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 13279901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 2059490 - 2059556
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||| ||  ||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||    
T  2059490 gagaaattcttgggtaggaacgaacctaacctatcatccttacaaacaacaaactaaaatatgacac 2059556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 3672087 - 3672018
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| ||||| ||||||||| |||| |||||||| ||||||| |||||||||||| || |||||||    
T  3672087 gagaaattcttatggaggaacgaatctaatatatcatttttacaaataacaaattaaaatataacacgtc 3672018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 15330449 - 15330505
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaa 163  Q
    |||||||| || |||||||||||||||||| |||||||||||||||||| ||||||||    
T  15330449 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaacaataaattaaa 15330505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 42028675 - 42028628
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  42028675 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 42028628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 322
Target Start/End: Original strand, 15332844 - 15332876
Alignment:
Q  290 aaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||||||||||||||||||||||||||||||||    
T  15332844 aaaataaaacaatgacgtgtcatgttttaattt 15332876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 2059651 - 2059698
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| |||||||||| |||||||||    
T  2059651 ttttataattattttaaaagaaaacaacgacgtgtcatattttaattt 2059698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 13280002 - 13280049
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||| ||||||||||||||    
T  13280002 ttttataattattttaaaagaaaacaacgacgtatcatgttttaattt 13280049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 16115143 - 16115096
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| |||||||||| |||||||||    
T  16115143 ttttataattattttaaaagaaaacaacgacgtgtcatattttaattt 16115096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 31860252 - 31860299
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| || |||||||||||||||||    
T  31860252 ttttataattattttaaaagaaaacaacgatgtgtcatgttttaattt 31860299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 9e-67; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 104 - 322
Target Start/End: Original strand, 18936674 - 18936891
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    |||||||||| || |||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||||           ||||||| |||||||||    
T  18936674 aagagaaattcttgtgtatgaacgaacataac-tatcattcttacaaacaacaaattaaaacatgatacgtcatttttttcttcttttaatcatgattgg 18936772  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatg 303  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||    
T  18936773 tggtggtgaatactaactgcaaataatggtcgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatg 18936872  T
Q  304 acgtgtcatgttttaattt 322  Q
    |||||||||||||||||||    
T  18936873 acgtgtcatgttttaattt 18936891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 187 - 322
Target Start/End: Original strand, 37177705 - 37177840
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattat 286  Q
    |||||||  ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||| | ||||||    
T  37177705 cttttaattatgattggtggtggtaaatactaactgcaaataatggttgagagagaggaggagctgttatttttcatttcttaaattatttccaaattat 37177804  T
Q  287 tttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||||| ||||||||||||||    
T  37177805 tttaaaataaaacaatgacgtatcatgttttaattt 37177840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 322
Target Start/End: Complemental strand, 11147204 - 11147064
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattat 286  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| | ||||||    
T  11147204 cttttaaccatgattggtggtggtgaatactaacagcaaataatggttgagagagaggaggagcatttatttttcctttcttaaattatttccaaattat 11147105  T
Q  287 tttaaaataaaacaat-----gacgtgtcatgttttaattt 322  Q
    ||||||||||||||||     ||||||||||||||||||||    
T  11147104 tttaaaataaaacaatgacaagacgtgtcatgttttaattt 11147064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 11147013 - 11147083
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11147013 agagaaattcttgtgtaggaacgaacctaatatatcattcttacaaacaacaaattaaaacatgacacgtc 11147083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 5121073 - 5121005
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5121073 aagagaaattcttgtgtaggaacaaacctaacatatcattcttacaaacaacaaattaaaacatgacac 5121005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 40533961 - 40534033
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  40533961 aagagaaattcttgtgtaggaacgaacctaacctatcattcttacaaacaacaaattaaaacatgatacgtcg 40534033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 3102804 - 3102734
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  3102804 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 3102734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 40534227 - 40534157
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  40534227 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 40534157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Original strand, 3102538 - 3102610
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  3102538 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 3102610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 18381575 - 18381507
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  18381575 aagagaaattcttgtgtaggaacgaacctaacatttcattcttacaagcaacaaattaaaacatgacac 18381507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 37177892 - 37177821
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||| || | ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  37177892 aagagaaattcttgtctaggaacgaacataacatatcattcttacaaacaacaaattaaaacatgatacgtc 37177821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 18936942 - 18936872
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||||| || | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  18936942 agagaaattcttgtctaggaacgaacctaatatatcattcttacaaacaataaattaaaacatgacacgtc 18936872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 176
Target Start/End: Original strand, 13690216 - 13690285
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||    
T  13690216 agaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgatacgtcg 13690285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 9231580 - 9231650
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||    
T  9231580 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcg 9231650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 3102707 - 3102754
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  3102707 ttttataattattttaaaaaaaaacaacgacgtgtcatgttttaattt 3102754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 9231825 - 9231782
Alignment:
Q  125 acgaacctaacatatcattcttacaaacaacaaattaaaacatg 168  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  9231825 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 9231782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 40534130 - 40534177
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  40534130 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 40534177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 175
Target Start/End: Complemental strand, 11147290 - 11147220
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||| ||||| |||||||| |||||| ||||| ||| |||||||||||||| ||||||||| |||||| |||    
T  11147290 aagaaaaattcttatgtagaaacgaatctaac-tattattcttacaaacaataaattaaaatatgacatgtc 11147220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 287 - 322
Target Start/End: Original strand, 18381488 - 18381523
Alignment:
Q  287 tttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||||||||||||||||| |||||||||||||||||    
T  18381488 tttaaaataaaacaatgatgtgtcatgttttaattt 18381523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 118 - 322
Target Start/End: Complemental strand, 23346672 - 23346469
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtggtggtgaatact 217  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||           |||||||||||||||||||||||||||||||    
T  23346672 tgtaggaacgaacctaac-tatcattcttacaaacaataaattaaaacatgacatgtcattttttttttcttttaaccatgattggtggtggtgaatact 23346574  T
Q  218 aactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgacgtgtcatgtttt 317  Q
    |||||| |||||||||||||||||||||| |||||||| ||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||||||    
T  23346573 aactgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttccaaattattttaaaataaaaaaatgacgtgtcatgtttt 23346474  T
Q  318 aattt 322  Q
    |||||    
T  23346473 aattt 23346469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 50893226 - 50893013
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||           |||||||||||||||| ||    
T  50893226 gagaaattcttgtgtaggaacgaacctaac-tatcattattacaaacaacaaattaaaacatgacacatc--attttttttcttttaaccatgattgatg 50893130  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    ||||||||||||||| || |||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  50893129 gtggtgaatactaaccgcaaataatggttgagagagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgac 50893030  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  50893029 gtgtcatgttttaattt 50893013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 106 - 318
Target Start/End: Original strand, 4156892 - 4157103
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||| ||||||||| ||||||||||||||| || ||||||||||||||||||||           |||||||||||||||||||    
T  4156892 gagaaattcttgtgtaggaaggaacctaac-tatcattcttacaaataataaattaaaacatgacacgtcattttttttttcttttaaccatgattggtg 4156990  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||||||||||||||||    
T  4156991 gtggtgaatactaactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttccaaattattttaaaataaaacaatgac 4157090  T
Q  306 gtgtcatgtttta 318  Q
    |||  ||||||||    
T  4157091 gtgcaatgtttta 4157103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 106 - 318
Target Start/End: Original strand, 42180571 - 42180782
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||           ||||||||||||||||||     
T  42180571 gagaaattcttgtgtaggaacgaacctaac-tagcattattacaaacaacaaattaaaacatgacacgtcatattttttttcttttaaccatgattggta 42180669  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
    |||||||||||| || || |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||     
T  42180670 gtggtgaatactgaccgcaaataatggttgagagaaaggaggagcagttatttttcatttcttaaattattttctaattattttaaaataaaataatgat 42180769  T
Q  306 gtgtcatgtttta 318  Q
    |||||||||||||    
T  42180770 gtgtcatgtttta 42180782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 322
Target Start/End: Complemental strand, 41834139 - 41833924
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || ||||||||||||| |||| || |||| |||||||||||||||||||||||||||||||            ||||||||||||||| |     
T  41834139 gagaaattcttgtgtaggaacgaacataac-tagcattattacaaacaacaaattaaaacatgacacgtcatatttttttttttttaaccatgattgata 41834041  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgac 305  Q
     ||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  41834040 atggtgaatactgactgcaaataatggttgagagagaggaggagcagttatttttcatttcttaaattatttcctaattattttaaaataaaataatgac 41833941  T
Q  306 gtgtcatgttttaattt 322  Q
    |||||||||||||||||    
T  41833940 gtgtcatgttttaattt 41833924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 106 - 278
Target Start/End: Original strand, 48871247 - 48871418
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||           |||||||||||||||||||    
T  48871247 gagaaattcttgtgtaggaacgaacctaac-tatcattcttacaaataacaaattaaaacatgacacatcattttttttttcttttaaccatgattggtg 48871345  T
Q  206 gtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattatttt 278  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||    
T  48871346 gtggtgaatattaactgcaaataatagttgagagagaggaggagcagttatttttcatttcttaaattatttt 48871418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 322
Target Start/End: Complemental strand, 7062262 - 7062057
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnn-cttttaaccatgattg 202  Q
    ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||            ||||||||||||||||    
T  7062262 aagagaaatttttgtgtaggaacgaacctaac-tatcatttttacaaacaacaaattaaaatatgacacgtcatttttttttttcttttaaccatgattg 7062164  T
Q  203 gtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaat 302  Q
     |||||||||||||||||||| |||||||||||||  |||||||||||||||| ||||| |||||||           ||||||||||||||||||||||    
T  7062163 atggtggtgaatactaactgcaaataatggttgag--agaggaggagcagttatttttcatttctta-----------aattattttaaaataaaacaat 7062077  T
Q  303 gacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||||    
T  7062076 gacgtgtcatgttttaattt 7062057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 104 - 278
Target Start/End: Original strand, 28217528 - 28217700
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattgg 203  Q
    ||||||||||  | |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||           |||||||||||||||||    
T  28217528 aagagaaattcctgtgtaggaacgaacctaat-tatcattcttacaaacaacaaattaaaacatgacacgtc-atttttttttcttttaaccatgattgg 28217625  T
Q  204 tggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattatttt 278  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||    
T  28217626 tggtggtgaatagtaactgcaaataatggttgagagagaggaggagcaattatttttcatttcttaaattatttt 28217700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 197 - 322
Target Start/End: Original strand, 39669149 - 39669272
Alignment:
Q  197 tgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataa 296  Q
    |||||| |||||||||||| |||| || ||||||||||||||  ||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||    
T  39669149 tgattgatggtggtgaatattaaccgcaaataatggttgaga--gaggaggagcagttatttttcatttcctaaattatttcctaattattttaaaataa 39669246  T
Q  297 aacaatgacgtgtcatgttttaattt 322  Q
    |||||| |||||||||||||||||||    
T  39669247 aacaataacgtgtcatgttttaattt 39669272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 48752657 - 48752532
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtg 205  Q
    |||||||| || |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||           ||||||| |||||||||||    
T  48752657 gagaaattcttgtgtatgaacgaacctaac-tatcattcttacaaacaacaaattaaaacatgacacgtc-attttattttcttttaatcatgattggtg 48752560  T
Q  206 gtggtgaatactaactgccaataatggt 233  Q
    |||||||||||||||||| |||||||||    
T  48752559 gtggtgaatactaactgcaaataatggt 48752532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 23346418 - 23346488
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23346418 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaataaattaaaacatgacacgtc 23346488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 50892963 - 50893032
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50892963 gagaaatttttgtgtagcaacgaacttaacatatcattcttacaaacaacaaattaaaacatgacacgtc 50893032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 28217785 - 28217717
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28217785 aagagaaattattgtgtaggaacgaacctaacatatcattcttacaaacaacaaatcaaaacatgacac 28217717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 48871501 - 48871440
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 167  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48871501 gagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 48871440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 10227978 - 10227910
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  10227978 aagagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacac 10227910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 10227712 - 10227782
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  10227712 gagaaattcttgtgtaggaacgaacctaacctaccatccttacaaacaacaaattaaaacatgacacgtcg 10227782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 19059386 - 19059444
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  19059386 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 19059444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 50905175 - 50905107
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  50905175 agaaatttttgtgtaaaaacgaatctaacatatcattcttacaaacaacaaattaaaacatgatacgtc 50905107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 39669321 - 39669254
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgt 174  Q
    ||||||| || ||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  39669321 agaaattcttgtgtagaaacgaacttaacatatcattcttacaaagaacaaattaaaacatgacacgt 39669254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 26552256 - 26552186
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || ||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||    
T  26552256 gagaaattcttgtgtaggatcgaacctaacctatcatccttacaaacaacaaattaaaatatgacacgtcg 26552186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 263 - 319
Target Start/End: Complemental strand, 50905102 - 50905046
Alignment:
Q  263 tttcttaaattattttctaattattttaaaataaaacaatgacgtgtcatgttttaa 319  Q
    ||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||    
T  50905102 tttcttaaattatttccaaataattttaaaataaaacaatgacgtgtcatgttttaa 50905046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Original strand, 7062034 - 7062076
Alignment:
Q  133 aacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7062034 aacatatcattcttacaaacaacaaattaaaacatgacacgtc 7062076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 41833874 - 41833943
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || | ||| |||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  41833874 gagaaattcttgtatagaaacgaatctaatatatcattcttacacacaacaaattaaaacatgacacgtc 41833943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 175
Target Start/End: Original strand, 50904992 - 50905062
Alignment:
Q  107 agaaatttttatgtaggaacgaacctaacatat--cattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    ||||||| || ||||||||||||||||| ||||  |||| ||||||||||||| |||||||||||||||||    
T  50904992 agaaattcttgtgtaggaacgaacctaatatatatcatttttacaaacaacaagttaaaacatgacacgtc 50905062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 26551992 - 26552060
Alignment:
Q  108 gaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||| || |||||||||||| ||||| |||||| ||||||||||| ||||||||| ||| |||||||    
T  26551992 gaaattcttgtgtaggaacgaatctaacctatcatccttacaaacaaaaaattaaaatatggcacgtcg 26552060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 10227809 - 10227762
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  10227809 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 10227762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 172
Target Start/End: Complemental strand, 19059630 - 19059576
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||||||||||| |||||| |||| ||| |||||||||||| |||||||    
T  19059630 tgtaggaacgaacctaacctatcatccttataaagaacaaattaaaatatgacac 19059576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 28217692 - 28217733
Alignment:
Q  281 aattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||||||||||||||||||||||| |||||||||||| ||||    
T  28217692 aattattttaaaataaaacaatgatgtgtcatgttttgattt 28217733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 48871410 - 48871451
Alignment:
Q  281 aattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||||||||||||  ||||||||||||    
T  48871410 aattattttaaaataaaacaatgacgtgcaatgttttaattt 48871451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 42180806 - 42180770
Alignment:
Q  136 atatcattcttacaaacaacaaattaaaacatgacac 172  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42180806 atatcattcttacaaacaacaaactaaaacatgacac 42180770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 26552159 - 26552206
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| |||||||||| |||||||||    
T  26552159 ttttataattattttaaaagaaaacaacgacgtgtcatattttaattt 26552206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 109 - 322
Target Start/End: Original strand, 36635241 - 36635452
Alignment:
Q  109 aaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnncttttaaccatgattggtggtg 208  Q
    ||||| || |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||            ||||||||||||||||||||||    
T  36635241 aaattcttgtgtaggaacgaacctaac-tatcattgttacaaacaacaaattaaaacatgacacgta-ttttttttttcttttaaccatgattggtggtg 36635338  T
Q  209 gtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaatgacgtg 308  Q
    ||||||||||| ||| |||||||||||||| ||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  36635339 gtgaatactaagtgcaaataatggttgagaaagaggagaagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaatgacgtg 36635438  T
Q  309 tcatgttttaattt 322  Q
    ||||||||||||||    
T  36635439 tcatgttttaattt 36635452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 187 - 322
Target Start/End: Original strand, 19580389 - 19580524
Alignment:
Q  187 cttttaaccatgattggtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattat 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||||||||||||||  ||||||    
T  19580389 cttttaaccatgattggtggtggtgaatactaactgcaaataatggttgagagagaggaggagcagttgtttttcatttcttaaattattttaaaattat 19580488  T
Q  287 tttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    ||||||||||||||||||| ||||||||||||||||    
T  19580489 tttaaaataaaacaatgacatgtcatgttttaattt 19580524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 36635502 - 36635433
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtc 175  Q
    |||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  36635502 gagaaattcttgtgtaggaacgaacctaacatatcatttttacaaacaacaaattaaaacatgacacgtc 36635433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 19580576 - 19580509
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 171  Q
    |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19580576 aagagaaattcttgtataggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgaca 19580509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 33214442 - 33214513
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  33214442 agagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 33214513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 36274126 - 36274189
Alignment:
Q  113 ttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36274126 ttttgtgtaggaacgaacctaacatatcatccttacaaacaacaaattaaaacatgacacgtcg 36274189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 27073172 - 27073102
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  27073172 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 27073102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 36274391 - 36274319
Alignment:
Q  104 aagagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||||| ||||||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||    
T  36274391 aagagaaattcttatgtaggaacgaatctaacctatcatctttacaaacaacaaattaaaacatgacacgtcg 36274319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 33214704 - 33214633
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    ||||||||| || |||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  33214704 agagaaattcttgtgtaggaacgaacctaacctatcaaccttacaaacaacaaattaaaacatgacacgtcg 33214633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Original strand, 10598810 - 10598878
Alignment:
Q  108 gaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||| || |||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||    
T  10598810 gaaattcttgtgtaggaacgaacctaacctatcatctttacaaacaacaaattaaaacatgacacgtcg 10598878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 33219072 - 33219135
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatga 169  Q
    |||||||| || |||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  33219072 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatga 33219135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 10599062 - 10599000
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatg 168  Q
    |||||||| || ||| | ||||||||||||||||||| |||||||||||||||||||||||||    
T  10599062 gagaaattcttgtgtggaaacgaacctaacatatcatccttacaaacaacaaattaaaacatg 10599000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 27072912 - 27072974
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacat 167  Q
    ||||||||| || |||||||||||||||||  |||||| ||||||||||||||||||||||||    
T  27072912 agagaaattcttgtgtaggaacgaacctaatctatcatccttacaaacaacaaattaaaacat 27072974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 11651000 - 11651063
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatga 169  Q
    |||||||| || | || ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  11651000 gagaaattcttgtttatgaacgaacctaacatatcattcttacaaacaacaatttaaaatatga 11651063  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Original strand, 27073075 - 27073122
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  27073075 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 27073122  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 33214540 - 33214493
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  33214540 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 33214493  T

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Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 36274216 - 36274169
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  36274216 ttttataattattttaaaagaaaacaacgacgtgtcatgttttaattt 36274169  T

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Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 263 - 304
Target Start/End: Complemental strand, 11651109 - 11651068
Alignment:
Q  263 tttcttaaattattttctaattattttaaaataaaacaatga 304  Q
    ||||||||||||||| | ||||||||||||||||||||||||    
T  11651109 tttcttaaattatttccaaattattttaaaataaaacaatga 11651068  T

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Target: scaffold0140 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 105 - 301
Target Start/End: Original strand, 15846 - 16044
Alignment:
Q  105 agagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcgnnnnnnnnnn--cttttaaccatgattg 202  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||    
T  15846 agagaaattcttgtgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgttattatttttttttcttttaaccatgattg 15945  T
Q  203 gtggtggtgaatactaactgccaataatggttgagagagaggaggagcagttagttttcttttcttaaattattttctaattattttaaaataaaacaa 301  Q
    || |||||||||| |||| || |||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||    
T  15946 gtagtggtgaatattaaccgcaaataatggttgagagagaggagtagcagttatttttcatttcttaaattatttcctaattattttaaaataaaacaa 16044  T

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Target: scaffold0214 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 11891 - 11821
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  11891 gagaaattcttgtgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaacatgacacgtcg 11821  T

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Target: scaffold0214; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 11638 - 11692
Alignment:
Q  118 tgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacac 172  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||| |||||||    
T  11638 tgtaggaacgaacctaacctatcatccttacaaacaacaaattaaaatatgacac 11692  T

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Target: scaffold0214; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 11723 - 11676
Alignment:
Q  275 ttttctaattattttaaaataaaacaatgacgtgtcatgttttaattt 322  Q
    |||| |||||||||||||| |||||||||| ||||||| |||||||||    
T  11723 ttttataattattttaaaagaaaacaatgatgtgtcatattttaattt 11676  T

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Target: scaffold0135 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 37446 - 37516
Alignment:
Q  106 gagaaatttttatgtaggaacgaacctaacatatcattcttacaaacaacaaattaaaacatgacacgtcg 176  Q
    |||||||| || |||||||||||||||| | || ||| |||||||||||||||||||||||||||||||||    
T  37446 gagaaattcttgtgtaggaacgaacctagcctaccatccttacaaacaacaaattaaaacatgacacgtcg 37516  T

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Target: scaffold0135; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 37691 - 37648
Alignment:
Q  125 acgaacctaacatatcattcttacaaacaacaaattaaaacatg 168  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  37691 acgaacctaacctatcatccttacaaacaacaaattaaaacatg 37648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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