View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_19 (Length: 308)
Name: NF14981_low_19
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_19 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 9887270 - 9887578
Alignment:
| Q |
1 |
tttccgttgaacatgtttgtgaaagtcccatccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatt |
100 |
Q |
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| T |
9887270 |
tttccgttgaacatgtttgtgaaaatctcatccaaacttcattattgc-actagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatt |
9887368 |
T |
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| Q |
101 |
tatcactataaaatttcccaaatccaaaagttgtgcagttggattattctctgctttgcttgatatatat--ggttactaaccaaattgtgtttatttgt |
198 |
Q |
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| T |
9887369 |
tatcactataaaatttcccaaatccaaaagttgtgcagttggattattctctgctttgcttgatatatatatgtttgctaaccaaattgtgtttatttgt |
9887468 |
T |
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| Q |
199 |
gttggaaattcagaaatcactcattgtcacttttgtttgtaggcatctcgggtgtttgatacttgttagtgttcaatactaagacatgtgattacttatt |
298 |
Q |
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| T |
9887469 |
gttggaaattcagaaatcacacattgccacttttgtttgtaggtatctcgggtgtttgatacttgttagtgttcaatactaagacatgtgattacttatt |
9887568 |
T |
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| Q |
299 |
tcctagttgt |
308 |
Q |
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| T |
9887569 |
ttctagttgt |
9887578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 9886992 - 9887140
Alignment:
| Q |
1 |
tttccgttgaacatgtttgtgaaagtcccatccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatt |
100 |
Q |
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| T |
9886992 |
tttccgttgaacatgtttgtgaaaatctcatccaaacttcattattgc-actagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatt |
9887090 |
T |
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| Q |
101 |
tatcactataaaatttcccaaatccaaaagttgtgcagttggattattct |
150 |
Q |
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| T |
9887091 |
tatcactataaaatttcccaaatccaaaagttgtgcagttggattattct |
9887140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 7 - 170
Target Start/End: Complemental strand, 9884316 - 9884153
Alignment:
| Q |
7 |
ttgaacatgtttgtgaaagtcccatccaagcttcattattgccaccagtgtataagatgggtaatcacatctctgccacaaaaacatgtcaatttatcac |
106 |
Q |
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| T |
9884316 |
ttgaacatgtttgtgaaaataccatccaagcttcattattgtcaccagtgtataaaatcggtaatcataactttgccacaaaaacatgtcaacttatcac |
9884217 |
T |
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| Q |
107 |
tataaaatttcccaaatccaaaagttgtgcagttggattattctctgctttgcttgatatatat |
170 |
Q |
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| T |
9884216 |
tataaaatttcccgaatcgtaaagttgtgcagttggattattctctgttttgcttgatatatat |
9884153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 9884118 - 9884064
Alignment:
| Q |
163 |
atatatatggttactaaccaaattgtgtttatttgtgttggaaattcagaaatcac |
218 |
Q |
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| T |
9884118 |
atatatatgtttgctaaccaaattgtgttta-ttgtgctagaaattcagaaatcac |
9884064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 6141099 - 6141141
Alignment:
| Q |
5 |
cgttgaacatgtttgtgaaagtcccatccaagcttcattattg |
47 |
Q |
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| T |
6141099 |
cgttgaacacgtttgtgaaaatcgcatccaagcttcattattg |
6141141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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