View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_2 (Length: 580)
Name: NF14981_low_2
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 11 - 564
Target Start/End: Complemental strand, 36182777 - 36182224
Alignment:
| Q |
11 |
gtgagatgaatcaacttataattaaaaaacaataagtatgcaaatagcggaaaaggtgcatatgaagctaaaaagtatcatgaagtgacacattcaactt |
110 |
Q |
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| T |
36182777 |
gtgacatgaatcaacttataattaggaaacaataagtatgcaaatagcggaaaaggtgcatatgaagctaaaaagtatcaggaagtgacacattcaactt |
36182678 |
T |
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| Q |
111 |
ccaggtaacaattatttagagattatacaacactcgagagtaaagacagagaatttggcatgccgacaatacatgtagaaccgtaacaatagagttatgt |
210 |
Q |
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| T |
36182677 |
ccaggtaacaattatttagagattatacaacactcgagagtaaagacggagaatttggcatgccaacaatacatgtagcaccgtaacaatagagttatgt |
36182578 |
T |
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| Q |
211 |
acctttctacaagggactgaggatgccttggccttgggtggatttgcacttttctctctgtattttgaagaataaacaatagcccatggttaatattcaa |
310 |
Q |
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| T |
36182577 |
acctttctacaagggactgaggatgccttggccttgggtggatttgcacttttctctctgtattttgaagaataaacaatagcccatggttaatattcaa |
36182478 |
T |
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| Q |
311 |
catcaagaccagaaacagttttacatatgtggagttgagtgatacatctaaacgattaattactagtgcactatgaagaataatcattatgctgcgcatt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36182477 |
catcaagaccagaaacagttttacatatgtggagttgagtgatacatctaaacgattaattactagtgcactacgaagaataatcattatgctgcgcatt |
36182378 |
T |
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| Q |
411 |
ttatcatatcagagagggatggttacctagtattacagaccctcgaagttgacttgcttttatccttccttttaatggtattgctatttgcaggtttgtt |
510 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36182377 |
ttatcatatcagagagggatgattacctagtattacagaccctcgaagttgacttgcttttatccttccttttaatggtattgctatttgcaggtttgtt |
36182278 |
T |
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| Q |
511 |
ccatctatccatgggcgtgatgcttgaaggaatgtccactttatcccttccttt |
564 |
Q |
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| T |
36182277 |
ccatctatccatgggcgtgatgcttgaaggaatgtccactttatcccttccttt |
36182224 |
T |
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