View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_low_27 (Length: 249)

Name: NF14981_low_27
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_low_27
NF14981_low_27
[»] chr5 (1 HSPs)
chr5 (17-220)||(33953342-33953549)
[»] scaffold0438 (1 HSPs)
scaffold0438 (87-223)||(12645-12781)
[»] chr8 (3 HSPs)
chr8 (87-223)||(26342484-26342620)
chr8 (90-223)||(26295156-26295289)
chr8 (90-223)||(26308413-26308546)
[»] chr3 (9 HSPs)
chr3 (49-118)||(147793-147862)
chr3 (123-237)||(8031700-8031812)
chr3 (49-114)||(1206484-1206549)
chr3 (49-118)||(24103552-24103621)
chr3 (114-195)||(742559-742637)
chr3 (114-195)||(752967-753045)
chr3 (51-118)||(1188884-1188952)
chr3 (115-193)||(7435993-7436068)
chr3 (115-204)||(24103436-24103525)
[»] chr2 (4 HSPs)
chr2 (113-180)||(43865743-43865808)
chr2 (66-113)||(43849635-43849682)
chr2 (113-200)||(43862203-43862287)
chr2 (113-157)||(43849563-43849607)


Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 33953549 - 33953342
Alignment:
Q  17 caattgaaaccagctcgtgcactctttggacaactgcataggtgaatacaagatgttgggctgcagaaaaaacatggtgaaggatacagaagtttttcaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  33953549 caattgaaaccagctcgtgcactctttggacaactgcataggtgaatacaagatgttgggctacagaaaaaacatggtgaaggatacaaaagtttttcaa 33953450  T
Q  117 agtat----cgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatccacgtaaccgacccgattg 212  Q
    |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| | |     
T  33953449 agtatcgatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgattcatgtaactgacccaactt 33953350  T
Q  213 agagggat 220  Q
    ||||||||    
T  33953349 agagggat 33953342  T

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Target: scaffold0438 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 12645 - 12781
Alignment:
Q  87 aacatggtgaaggatacagaagtttttcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtct 186  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12645 aacatggtgaacgatacagaagtttttcaaagtatggatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtct 12744  T
Q  187 tttgatccacgtaaccgacccgattgagagggatatg 223  Q
    ||||||||||||||||||||||| | |||||||||||    
T  12745 tttgatccacgtaaccgacccgacttagagggatatg 12781  T

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Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 87 - 223
Target Start/End: Original strand, 26342484 - 26342620
Alignment:
Q  87 aacatggtgaaggatacagaagtttttcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtct 186  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26342484 aacatggtgaacgatacagaagtttttcaaagtatggatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtct 26342583  T
Q  187 tttgatccacgtaaccgacccgattgagagggatatg 223  Q
    ||||||||||||||||||||||| | |||||||||||    
T  26342584 tttgatccacgtaaccgacccgacttagagggatatg 26342620  T

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Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 26295156 - 26295289
Alignment:
Q  90 atggtgaaggatacagaagtttttcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtctttt 189  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26295156 atggtgaaggataccgaagtttttcaaagtatggatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttat 26295255  T
Q  190 gatccacgtaaccgacccgattgagagggatatg 223  Q
    |||||||||||||||||||| | |||||||||||    
T  26295256 gatccacgtaaccgacccgacttagagggatatg 26295289  T

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Target: chr8; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 90 - 223
Target Start/End: Original strand, 26308413 - 26308546
Alignment:
Q  90 atggtgaaggatacagaagtttttcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtctttt 189  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26308413 atggtgaaggataccgaagtttttcaaagtatggatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttat 26308512  T
Q  190 gatccacgtaaccgacccgattgagagggatatg 223  Q
    |||||||||||||||||||| | |||||||||||    
T  26308513 gatccacgtaaccgacccgacttagagggatatg 26308546  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 118
Target Start/End: Original strand, 147793 - 147862
Alignment:
Q  49 actgcataggtgaatacaagatgttgggctgcagaaaaaacatggtgaaggatacagaagtttttcaaag 118  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||| |||||||    
T  147793 actgcataggtgaattcaggatgttgggttgcagaaaaaacatggtgaaggatacaaaagttattcaaag 147862  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 8031812 - 8031700
Alignment:
Q  123 gatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatccacgtaaccgacccgattgagagggatat 222  Q
    |||||||| ||||||||| ||||||||||| || |  ||||| ||||||||||||||| |||||||||||||| || |||||||||| | | ||| ||||    
T  8031812 gatgcattgttacaagaatacttttgcttaatttt--acttgttagacttatttatggatgtcttttgatccatgtcaccgacccgacttaaaggaatat 8031715  T
Q  223 ggtttgtttgatttt 237  Q
    |||||| ||| ||||    
T  8031714 ggtttggttgttttt 8031700  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 1206484 - 1206549
Alignment:
Q  49 actgcataggtgaatacaagatgttgggctgcagaaaaaacatggtgaaggatacagaagtttttc 114  Q
    |||||||||||||| ||| |||||| || ||||||||||||||||||||||||||| |||||||||    
T  1206484 actgcataggtgaacacatgatgttcggttgcagaaaaaacatggtgaaggatacaaaagtttttc 1206549  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 118
Target Start/End: Complemental strand, 24103621 - 24103552
Alignment:
Q  49 actgcataggtgaatacaagatgttgggctgcagaaaaaacatggtgaaggatacagaagtttttcaaag 118  Q
    |||||||||||||| ||| | |||| || ||||||||||||||||||||||||||| |||||||||||||    
T  24103621 actgcataggtgaacacaggttgttaggttgcagaaaaaacatggtgaaggatacaaaagtttttcaaag 24103552  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 742637 - 742559
Alignment:
Q  114 caaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatcca 195  Q
    |||||||| |||| ||||| ||||||||||||||||| |||  |||||| |||||||||||| || ||||||||||||||||    
T  742637 caaagtattgatggattataacaagaacacttttgctcatt--tctactcgctagacttattcat-ggtgtcttttgatcca 742559  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 114 - 195
Target Start/End: Complemental strand, 753045 - 752967
Alignment:
Q  114 caaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatcca 195  Q
    |||||||| |||| ||||| ||||||||||||||||| |||  |||||| |||||||||||| || ||||||||||||||||    
T  753045 caaagtattgatggattataacaagaacacttttgctcatt--tctactcgctagacttattcat-ggtgtcttttgatcca 752967  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 1188884 - 1188952
Alignment:
Q  51 tgcataggtgaatacaagatgttgggctgcagaaaa-aacatggtgaaggatacagaagtttttcaaag 118  Q
    |||||||||||| ||| ||||||  | ||||||||| |||||||||||||||||| |||||||||||||    
T  1188884 tgcataggtgaacacaggatgttcagttgcagaaaaaaacatggtgaaggatacaaaagtttttcaaag 1188952  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 7436068 - 7435993
Alignment:
Q  115 aaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatc 193  Q
    ||||||| |||| ||||| ||||||||||||||||| |||  ||||||||||||||||||| ||  |||||||||||||    
T  7436068 aaagtattgatggattataacaagaacacttttgctgatt--tctacttgctagacttattcat-cgtgtcttttgatc 7435993  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 204
Target Start/End: Complemental strand, 24103525 - 24103436
Alignment:
Q  115 aaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttat---gggtgtcttttgatccacgtaaccga 204  Q
    |||||||| ||||||||| |||||||||||||| ||||||  ||| ||||||||||||| ||||    |||||| ||||||||| ||||||||    
T  24103525 aaagtatc-atgcattataacaagaacacttttccttatt--tcttcttgctagacttacttatttaaggtgtcatttgatccatgtaaccga 24103436  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 43865808 - 43865743
Alignment:
Q  113 tcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgg 180  Q
    ||||||||| |||||||||| ||||||||||||||||| |||  ||||||||||||||||||| ||||    
T  43865808 tcaaagtatggatgcattataacaagaacacttttgctcatt--tctacttgctagacttattcatgg 43865743  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 43849682 - 43849635
Alignment:
Q  66 aagatgttgggctgcagaaaaaacatggtgaaggatacagaagttttt 113  Q
    ||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  43849682 aagatgttggattgcagaaaaaacatggtgaaggatacataagttttt 43849635  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 43862287 - 43862203
Alignment:
Q  113 tcaaagtatcgatgcattattacaagaacacttttgcttatttctctacttgctagacttatttatgggtgtcttttgatccacgtaa 200  Q
    ||||||||| ||| |||||| ||||||||||||||||| |||  ||||||||| | |||||| ||| |||||| ||||||||| ||||    
T  43862287 tcaaagtattgatccattataacaagaacacttttgctcatt--tctacttgc-aaacttatatataggtgtcgtttgatccatgtaa 43862203  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 43849607 - 43849563
Alignment:
Q  113 tcaaagtatcgatgcattattacaagaacacttttgcttatttct 157  Q
    ||||||||| ||| |||||| ||||||||||||||||| ||||||    
T  43849607 tcaaagtattgatacattataacaagaacacttttgctcatttct 43849563  T

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