View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14981_low_28 (Length: 247)
Name: NF14981_low_28
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 39488804 - 39489006
Alignment:
| Q |
1 |
ctcaaaacctccaaaatgtggtgattgagatggatgctgctaatgtagtcaactgtattatggggaagatgaactgtgttgaaattgatttcattattgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488804 |
ctcaaaacctccaaaatgtggtgattgagatggatgctgctaatgtagtcaattgtattatggggaagatgaactgtgttgaaattgatttcattattgt |
39488903 |
T |
|
| Q |
101 |
tgactgtttagacattttggttagtttattaaatgtaagtgttgttgctgttaaaagatgtaagaacaaagctgcccatgctcttgtaggtgtagctaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39488904 |
tgactgtttagacattttggttagtttattaaatataagtgttgttgctgttaaaagatgtaagaacaaagctgcccatgctcttgtaggtgtagctaga |
39489003 |
T |
|
| Q |
201 |
agt |
203 |
Q |
| |
|
||| |
|
|
| T |
39489004 |
agt |
39489006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 39494178 - 39494227
Alignment:
| Q |
193 |
tagctagaagtgtaggtactaaggaatggattgggaatgtctctgctcct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
39494178 |
tagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcct |
39494227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 46034926 - 46035075
Alignment:
| Q |
1 |
ctcaaaacctccaaaatgtggtgattgagatggatgctgctaatgtagtcaactgtattatggggaagatgaactgtgttgaaattgatttcattattgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46034926 |
ctcaaaacctccaaaatgtggtgattgagatggatgctgctaatgtagtcaactgtattatggggaagatgaactgtgttgaaattgattttattattgt |
46035025 |
T |
|
| Q |
101 |
tgactgtttagacattttggttagtttattaaatgtaagtgttgttgctg |
150 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46035026 |
tgactgtttagacattttagttagtttattaaatgtaagtgttgttgctg |
46035075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 171 - 242
Target Start/End: Original strand, 46035072 - 46035143
Alignment:
| Q |
171 |
gctgcccatgctcttgtaggtgtagctagaagtgtaggtactaaggaatggattgggaatgtctctgctcct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
46035072 |
gctgcccatgctcttgtaggtgtagctagaagtgtaggtactaaggaatggattgggaatgtccctgatcct |
46035143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University