View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_31 (Length: 242)
Name: NF14981_low_31
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 17 - 228
Target Start/End: Original strand, 8192668 - 8192879
Alignment:
| Q |
17 |
atataagatatataatgcattaactattaactatacaacataaaatgaaaagacttgccaattatacctgacagaacgccgtaaaatagccctcgcttcc |
116 |
Q |
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| T |
8192668 |
atataaaatatataatgcattaactattaactatacaacataaaatgaaaagacttgccaattatacctgacagaacgccgtaaaatagccctcgcttcc |
8192767 |
T |
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| Q |
117 |
cctggctttccttccttcnnnnnnnccatctcccgaatctgtcaaatgacaccaccttccatctgtaatgcagcataccaaaaagaggggagaaacgaga |
216 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
8192768 |
cctggctttccttccatctttttttccatctcccgaatctgtcaaatgacaccaccttccatctgtaatgcagcataccaaaaagaggggggaaacgaga |
8192867 |
T |
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| Q |
217 |
aaggtaagaagt |
228 |
Q |
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|||||||||||| |
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| T |
8192868 |
aaggtaagaagt |
8192879 |
T |
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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 42350510 - 42350693
Alignment:
| Q |
42 |
attaactatacaacataaaatgaaaagacttgccaattatacctgacagaacgccgtaaaatagccctcgcttcccctggctttccttccttcnnnnnnn |
141 |
Q |
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|||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42350510 |
attaactatacaacataaaatgaaaagacttgcccattttccctgacagaacgccgtaaaatagccctagcttcccctggctttccttccttcttctttt |
42350609 |
T |
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| Q |
142 |
ccatctcccgaatctgtcaaatgacaccaccttccatctgtaatgcagcataccaaaaagaggggagaaacgagaaaggtaagaa |
226 |
Q |
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|||||||||| | ||||||||| |||||||||| |||| ||||||||||||| ||||||||| ||||||| | |||||||||||| |
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| T |
42350610 |
ccatctcccggacctgtcaaattacaccacctt-catcggtaatgcagcatatcaaaaagagaggagaaatgtgaaaggtaagaa |
42350693 |
T |
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