View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_38 (Length: 201)
Name: NF14981_low_38
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 7656832 - 7656665
Alignment:
| Q |
15 |
atactcacacttctgtttggtccatattatatacagcagctaaaagcctaaaactcaaactaaagttttcgtttattaataaaaataattagttt---tt |
111 |
Q |
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| T |
7656832 |
atactcacacttctgtttggtccatattatatacagtagctaaaagcctaaaactcaaactaaagttttcgtttattaataaaaataattagttttaatt |
7656733 |
T |
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| Q |
112 |
atttcaagaaataattggagtaaactatgaacaattgattaatctacttttaagaaaatacagttgat |
179 |
Q |
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| T |
7656732 |
atttccagaaataattggagtaaactatgaacaattgattaatctacttttaagaaaatatagttgat |
7656665 |
T |
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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 7626549 - 7626633
Alignment:
| Q |
46 |
tacagcagctaaaagcctaaaactcaaactaaagttttcgtttattaataaaaataat-tagtttttatttcaagaaataattggagta |
133 |
Q |
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||||| |||||||||||||||||||||||| ||||||| ||||||||| ||||||| || |||||||||| | |||||||||||||| |
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| T |
7626549 |
tacagtagctaaaagcctaaaactcaaact--agttttcttttattaat--aaataatctaatttttatttccacaaataattggagta |
7626633 |
T |
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