View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14981_low_4 (Length: 566)
Name: NF14981_low_4
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 13 - 550
Target Start/End: Complemental strand, 5805933 - 5805392
Alignment:
| Q |
13 |
attatactgaaaacaaaacagagtataatgtttcaattttgatg-gctatttacttaactcaaaactccactccacattcgacagtgactggttccaatt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805933 |
attatactgaaaacaaaacagagtataatgtttcaatcttgatgtgctatttacttaactcaaaactccactccacattcgacagtgactggttccaatt |
5805834 |
T |
|
| Q |
112 |
ttcaaaccattctttttacaacatctgaaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcaccaacaacctctgtta |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
5805833 |
ttcaaaccattctttttacaacctctgaaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccagcatgtctcaccaacaacctctgtta |
5805734 |
T |
|
| Q |
212 |
gaacaa---gaacaagaaggagaagaaacggcttacgattcatctgaagtggttgttgttgttggaaccgacgaagaagaagcctatgaagccgaggtgg |
308 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805733 |
gaacaacaagaagaagaaggagaagaaacggcttacgattcatctgaaaaggttgttgttgttggaaccgacgaagaagaagcctatgaagccgaggtgg |
5805634 |
T |
|
| Q |
309 |
actcaggagtacgaattccaccgttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaactt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805633 |
actcaggagtacgaattccaccgttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaactt |
5805534 |
T |
|
| Q |
409 |
ggaaggagatcttcaatctggtgcaattgctgggtattcattgttatggcttcttatgtgggccactgctatggggcttttgattcagcttttgtcagca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5805533 |
ggaaggagatcttcaatctggtgcaattgctgggtattcattgttatggcttcttatgtgggctactgctatggggcttttgattcagcttttgtcagca |
5805434 |
T |
|
| Q |
509 |
aggttaggtgttgctacgggaagacatttggctgaactttgt |
550 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
5805433 |
aggttaggtgttgctacgggaagacatttggctgaactttgt |
5805392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 41 - 495
Target Start/End: Complemental strand, 9562807 - 9562357
Alignment:
| Q |
41 |
tgtttcaattttgatg-gctatttacttaactcaaaactccactccacattcgacagtgactggttccaattttcaaaccattctttttacaacatctga |
139 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| || ||||||||| | | | |
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|
| T |
9562807 |
tgtttcaattttgatgtgctatttacttaactcaaaactccacac-----tcgacagtgacttgttccaattttcaaacctctcgttttacaacctttta |
9562713 |
T |
|
| Q |
140 |
aaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcacca---------acaacctctgttagaacaagaacaagaaggag |
230 |
Q |
| |
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||||||||||||| || ||||| |||| ||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
9562712 |
aaacacaacacaccagtgtaactgcaacaccaatcattatccaccaccatgtctcaccaccaacaacaacaacctctgttagaacaacaacaagaag--- |
9562616 |
T |
|
| Q |
231 |
aagaaacggcttacgattcatctgaagtggttgttgttgttggaaccgacgaagaagaagcctatgaagccgaggtggactcaggagtacgaattccacc |
330 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||| || |||||||| ||||||||||||||| | |
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|
| T |
9562615 |
---aaatcgcttacgattcatctgaa---aaagttgttgttggaaccgacgaagaaaaagcctacgaagctgacgtggactccggagtacgaattccagc |
9562522 |
T |
|
| Q |
331 |
gttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaacttggaaggagatcttcaatctggt |
430 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||| |
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|
| T |
9562521 |
gttttcatggaagaaactacccttattcagtggaccgggttttctaatgagtatagcatttttggatcttggaaacttggaagaagatctttaatctggt |
9562422 |
T |
|
| Q |
431 |
gcaattgctgggtattcattgttatggcttcttatgtgggccactgctatggggcttttgattca |
495 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||||| | || |||||||||||||||||| |
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|
| T |
9562421 |
acaatttctgggtattcattgttatgacttcttatgtgggctattgatatggggcttttgattca |
9562357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 326 - 550
Target Start/End: Original strand, 39672235 - 39672459
Alignment:
| Q |
326 |
ccaccgttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaacttggaaggagatcttcaat |
425 |
Q |
| |
|
||||| |||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| ||||||||||| || ||||| |||||||| || ||| |
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| T |
39672235 |
ccaccattttcatggaagaagctatggctattcactggacctggttttctaatgagtatagcgtttttggatccagggaacttagaaggagacctacaag |
39672334 |
T |
|
| Q |
426 |
ctggtgcaattgctgggtattcattgttatggcttcttatgtgggccactgctatggggcttttgattcagcttttgtcagcaaggttaggtgttgctac |
525 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| | ||||| ||||| |
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|
| T |
39672335 |
ctggtgccattgctgggtattctttgttatggcttcttatgtgggccacagctatgggacttttgattcagcttttgtcagctaggcttggtgtggctac |
39672434 |
T |
|
| Q |
526 |
-gggaagacatttggctgaactttgt |
550 |
Q |
| |
|
|||||| ||||||||||| |||||| |
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|
| T |
39672435 |
agggaag-catttggctgagctttgt |
39672459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 41 - 498
Target Start/End: Complemental strand, 21017237 - 21016784
Alignment:
| Q |
41 |
tgtttcaattttgatg-gctatttacttaa-ctcaaaactccactccacattcgacagtgactggttccaattttcaaaccattctttttacaacatctg |
138 |
Q |
| |
|
|||||||||||||||| |||||| |||||| ||||||||||||| | || | || |||| ||||||||||||||||| |||||||||||| ||| |
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|
| T |
21017237 |
tgtttcaattttgatgtgctattcacttaaactcaaaactccacac-----tcaatagcgactagttccaattttcaaacctctctttttacaacctctt |
21017143 |
T |
|
| Q |
139 |
aaaacacaacacacaagcgtaaccgcaaagccaatcattatccaccatcatgtctcaccaacaac------ctctgttagaacaagaacaagaaggagaa |
232 |
Q |
| |
|
|||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||| |||| ||| ||||||| || |
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|
| T |
21017142 |
aaaatacaacacacaagcgtaactgcaatgccaatcattatccaccaccatgtctcaccaacaacaacaacctctgctagatcaa---caagaag---aa |
21017049 |
T |
|
| Q |
233 |
gaaacggcttacgattcatctgaagtggttgttgttgttggaaccgacgaagaagaagcctatgaagccgaggtggactcaggagtacgaattccaccgt |
332 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||| |||| ||| |
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|
| T |
21017048 |
gaaaccacttacaattcatctgaaaaggttgttgttgttggaaccgacgaagaagaagccta-gaagctgacgtggactctggagtacgaaatccaacgt |
21016950 |
T |
|
| Q |
333 |
tttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaacttggaaggagatcttcaatctggtgc |
432 |
Q |
| |
|
||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21016949 |
tttcatggaagaaacaacggttattcagtgggctaggttttctaatgagtataacatttttggatcctggaaacttggaaggagatcttcaatctggtgt |
21016850 |
T |
|
| Q |
433 |
aattgctgggtattcattgttatggcttcttatgtgggccactgctatggggcttttgattcagct |
498 |
Q |
| |
|
|||| || ||||||| |||||||| |||||||||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
21016849 |
aatttcttggtattcgttgttatgacttcttatgtgggctactactacagggcttttgattcagct |
21016784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 457
Target Start/End: Original strand, 47290075 - 47290208
Alignment:
| Q |
324 |
ttccaccgttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaacttggaaggagatcttca |
423 |
Q |
| |
|
||||||| |||||||||||||| || ||| | |||| |||||||| || | |||||||||||||||||||||||||| || |||||||| ||||| || |
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|
| T |
47290075 |
ttccacctttttcatggaagaagctatggatgttcacaggaccaggattcttgatgagtatagcatttttggatcctgggaatttggaaggtgatctaca |
47290174 |
T |
|
| Q |
424 |
atctggtgcaattgctgggtattcattgttatgg |
457 |
Q |
| |
|
| | || || ||||| |||||||||||| ||||| |
|
|
| T |
47290175 |
agcaggagcgattgcagggtattcattgctatgg |
47290208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 474
Target Start/End: Original strand, 10388046 - 10388194
Alignment:
| Q |
326 |
ccaccgttttcatggaagaaactctggttattcagtggaccaggttttctaatgagtatagcatttttggatcctggaaacttggaaggagatcttcaat |
425 |
Q |
| |
|
||||| |||||||||||||| |||||| | |||| || ||||| ||||||||||| | |||||||||||||| |||||| | |||||||| | ||| |
|
|
| T |
10388046 |
ccaccattttcatggaagaagctctggctcttcacggggccagggcttctaatgagtgtggcatttttggatccaggaaacatagaaggagacttgcaag |
10388145 |
T |
|
| Q |
426 |
ctggtgcaattgctgggtattcattgttatggcttcttatgtgggccac |
474 |
Q |
| |
|
| ||||| ||||| ||||| || ||| | |||||| | |||||| |||| |
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|
| T |
10388146 |
ccggtgcgattgcagggtactcgttgctttggcttttaatgtggtccac |
10388194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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