View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_5 (Length: 540)
Name: NF14981_low_5
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 530
Target Start/End: Complemental strand, 191719 - 191210
Alignment:
| Q |
18 |
attatcacaagctactcaaagatccctagctagagagtgtgactcaacatctcctttgatttttcggtgggaacttttgcagaatatgagaatatacttt |
117 |
Q |
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| T |
191719 |
attatcacaagctactcaaagatccctag----agagtgtgactcaacatctcctttgatttttcggtgggaacttttgcagaatatgagaatatacttt |
191624 |
T |
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| Q |
118 |
tccaaaaagaaaccctttggttccaaaaatatagagagaagtgggttcgttttggaagtaggaacattgcttttctccatactcaaactactatctatcg |
217 |
Q |
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| T |
191623 |
tccaaaaagaaaccctttggttccaaaaatatagagagaagtgggttcgttttggaagtaggaacattgcttttctccatactcaaactactatctatcg |
191524 |
T |
|
| Q |
218 |
ggnnnnnnnn-tgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgt |
316 |
Q |
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| T |
191523 |
ggaaaaaaaaatgcgggatcactcttccaacaggtgaatggtgtacaaataatgttgttgaagattgaagttttaaagttattttaaggatcttttttgt |
191424 |
T |
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| Q |
317 |
tccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
191423 |
tccaaggaaaatattgtgcatcctactatgatcgtggatcctaatcctctaggggaagtgcacaagacaagcttattggtgttcattagtaacaaagaga |
191324 |
T |
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| Q |
417 |
tttatcaagctctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttggggggttattggtaataa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
191323 |
tttatcaagctctcatgagcatgaagtcctacaaagttccaggtctagatgaattccaaccaatcttttataagatgttttgggaggttattggtaataa |
191224 |
T |
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| Q |
517 |
tgtatgctcctttg |
530 |
Q |
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|||||||||||||| |
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| T |
191223 |
tgtatgctcctttg |
191210 |
T |
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