View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14981_low_6 (Length: 448)

Name: NF14981_low_6
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14981_low_6
NF14981_low_6
[»] chr2 (26 HSPs)
chr2 (201-349)||(35969588-35969736)
chr2 (127-325)||(2590137-2590334)
chr2 (124-325)||(18739390-18739578)
chr2 (17-119)||(38085975-38086076)
chr2 (19-119)||(3671829-3671930)
chr2 (19-118)||(31470735-31470832)
chr2 (344-431)||(35969473-35969558)
chr2 (56-119)||(31470595-31470658)
chr2 (124-181)||(34564390-34564447)
chr2 (59-119)||(42028586-42028647)
chr2 (56-119)||(15332854-15332918)
chr2 (59-119)||(36059282-36059343)
chr2 (56-119)||(31860087-31860151)
chr2 (56-118)||(38086159-38086222)
chr2 (215-305)||(34564454-34564544)
chr2 (59-119)||(13280030-13280091)
chr2 (59-119)||(42028773-42028834)
chr2 (71-119)||(15330457-15330505)
chr2 (56-118)||(16115236-16115299)
chr2 (62-119)||(7317833-7317891)
chr2 (62-119)||(31860283-31860341)
chr2 (56-97)||(3672015-3672056)
chr2 (67-119)||(13279848-13279901)
chr2 (59-118)||(2059679-2059739)
chr2 (59-118)||(7317644-7317704)
chr2 (59-118)||(16115055-16115115)
[»] chr8 (12 HSPs)
chr8 (127-325)||(21185545-21185743)
chr8 (17-119)||(14193478-14193580)
chr8 (17-119)||(2814251-2814353)
chr8 (17-119)||(41539925-41540026)
chr8 (17-119)||(397015-397116)
chr8 (124-325)||(1789183-1789371)
chr8 (56-119)||(397197-397261)
chr8 (56-119)||(2814436-2814500)
chr8 (135-192)||(4327299-4327356)
chr8 (59-119)||(41539778-41539839)
chr8 (59-119)||(37994903-37994964)
chr8 (59-119)||(37994716-37994777)
[»] chr1 (26 HSPs)
chr1 (19-119)||(48871255-48871355)
chr1 (17-119)||(4156900-4157002)
chr1 (17-119)||(48752548-48752649)
chr1 (17-118)||(23346574-23346675)
chr1 (19-117)||(28217540-28217637)
chr1 (15-119)||(42180579-42180683)
chr1 (17-119)||(50893118-50893218)
chr1 (17-118)||(7062149-7062251)
chr1 (15-119)||(41834027-41834131)
chr1 (54-119)||(23346427-23346493)
chr1 (127-192)||(1968468-1968533)
chr1 (60-119)||(39669254-39669314)
chr1 (56-118)||(50892972-50893035)
chr1 (56-97)||(7062038-7062079)
chr1 (59-119)||(19059382-19059443)
chr1 (32-100)||(39669084-39669150)
chr1 (56-119)||(10227904-10227968)
chr1 (56-119)||(48871429-48871493)
chr1 (56-118)||(28217711-28217774)
chr1 (56-118)||(50905104-50905167)
chr1 (59-119)||(10227720-10227781)
chr1 (56-97)||(41833905-41833946)
chr1 (127-191)||(1953386-1953450)
chr1 (56-111)||(42180764-42180819)
chr1 (59-119)||(26552187-26552248)
chr1 (56-97)||(50905024-50905065)
[»] chr7 (14 HSPs)
chr7 (17-119)||(16979571-16979673)
chr7 (17-119)||(7298790-7298892)
chr7 (17-119)||(46567965-46568067)
chr7 (17-118)||(28948957-28949060)
chr7 (17-119)||(40521024-40521126)
chr7 (124-325)||(11673647-11673837)
chr7 (17-118)||(47478370-47478466)
chr7 (221-292)||(3850873-3850944)
chr7 (56-119)||(7298643-7298707)
chr7 (56-119)||(40521208-40521272)
chr7 (127-171)||(39426628-39426672)
chr7 (59-119)||(19805609-19805670)
chr7 (56-97)||(46568150-46568191)
chr7 (127-185)||(3850991-3851049)
[»] chr6 (8 HSPs)
chr6 (17-119)||(21389176-21389277)
chr6 (124-325)||(19698124-19698312)
chr6 (17-116)||(7789678-7789779)
chr6 (127-192)||(6950124-6950189)
chr6 (56-119)||(7789862-7789926)
chr6 (59-119)||(33022363-33022424)
chr6 (56-115)||(21389033-21389093)
chr6 (59-118)||(33022173-33022233)
[»] chr5 (28 HSPs)
chr5 (17-118)||(19897234-19897335)
chr5 (17-119)||(35454459-35454559)
chr5 (17-118)||(5146513-5146612)
chr5 (37-119)||(14388494-14388575)
chr5 (17-119)||(6518358-6518458)
chr5 (20-118)||(27319488-27319585)
chr5 (17-119)||(13823158-13823257)
chr5 (56-119)||(35454642-35454705)
chr5 (56-119)||(5146695-5146759)
chr5 (60-119)||(14069869-14069928)
chr5 (18-118)||(228926-229038)
chr5 (17-87)||(33377686-33377755)
chr5 (56-119)||(8489131-8489195)
chr5 (56-119)||(13823340-13823404)
chr5 (56-115)||(33377840-33377900)
chr5 (59-119)||(8323903-8323964)
chr5 (59-119)||(26534693-26534754)
chr5 (56-118)||(40881801-40881862)
chr5 (67-119)||(6518211-6518264)
chr5 (59-119)||(26534514-26534575)
chr5 (59-118)||(791601-791661)
chr5 (56-119)||(19898946-19899010)
chr5 (60-117)||(228727-228785)
chr5 (59-119)||(130262-130323)
chr5 (59-115)||(130443-130500)
chr5 (59-119)||(8323715-8323776)
chr5 (60-97)||(40882015-40882052)
chr5 (56-119)||(42630719-42630783)
[»] chr4 (14 HSPs)
chr4 (17-119)||(18936684-18936786)
chr4 (17-115)||(11147174-11147276)
chr4 (57-119)||(5121000-5121063)
chr4 (17-97)||(37177654-37177735)
chr4 (59-119)||(3102735-3102796)
chr4 (59-119)||(11147022-11147083)
chr4 (59-119)||(40533971-40534032)
chr4 (59-119)||(40534158-40534219)
chr4 (59-119)||(3102548-3102609)
chr4 (59-119)||(13690223-13690284)
chr4 (56-97)||(18936869-18936910)
chr4 (56-97)||(37177818-37177859)
chr4 (56-119)||(18381501-18381565)
chr4 (59-119)||(9231588-9231649)
[»] chr3 (16 HSPs)
chr3 (17-119)||(36635246-36635347)
chr3 (127-292)||(11634497-11634673)
chr3 (231-314)||(11640520-11640603)
chr3 (56-119)||(36635430-36635494)
chr3 (59-119)||(27073103-27073164)
chr3 (59-119)||(33214451-33214512)
chr3 (56-119)||(19580502-19580566)
chr3 (59-118)||(36274128-36274188)
chr3 (59-119)||(10598816-10598877)
chr3 (127-192)||(11641136-11641201)
chr3 (59-119)||(33214634-33214695)
chr3 (127-192)||(42258199-42258264)
chr3 (56-119)||(33219080-33219144)
chr3 (66-119)||(10599000-10599054)
chr3 (17-51)||(19580385-19580419)
chr3 (67-119)||(27072921-27072974)
[»] scaffold0140 (1 HSPs)
scaffold0140 (19-119)||(15855-15958)
[»] scaffold0014 (3 HSPs)
scaffold0014 (124-325)||(86670-86860)
scaffold0014 (215-325)||(82344-82456)
scaffold0014 (124-164)||(82271-82311)
[»] scaffold0214 (2 HSPs)
scaffold0214 (59-119)||(11822-11883)
scaffold0214 (56-119)||(11634-11698)
[»] scaffold0135 (1 HSPs)
scaffold0135 (59-119)||(37454-37515)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 201 - 349
Target Start/End: Complemental strand, 35969736 - 35969588
Alignment:
Q  201 gttgatgtttggcggttggctcaaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgta 300  Q
    |||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||  ||||||    
T  35969736 gttgatgtttgagagttggctcaaagactaaaatatcatttcctattattaagcctcatttttcttagtataaggaacaactcaccacaactccgatgta 35969637  T
Q  301 tatatccttcatttctttctccaaataaagcacgtataactctctaaag 349  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  35969636 tatatccttcatttctttctctaaataaagcacgtataactcactaaag 35969588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 127 - 325
Target Start/End: Original strand, 2590137 - 2590334
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtttaaccgttgatgtttggcggttggctcaaag 226  Q
    |||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||| | |||||||| |||||||  |||||| |||||     
T  2590137 attacttgttgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcacaattattt-tataaccgttcatgtttgatggttggatcaaat 2590235  T
Q  227 actaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctccaaa 325  Q
     ||||||| |||||||||||| ||| ||||| ||| | ||| |||||||||||||||||| ||||| | ||| ||||||||||| ||| ||||||||||    
T  2590236 gctaaaatctcattccctattgttatgcctcttttcccttaatataaggaacaactcaccgcaactctcatgaatatatccttcttttatttctccaaa 2590334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 325
Target Start/End: Complemental strand, 18739578 - 18739390
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtt-taaccgttgatgtttggcggttggctc 222  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||| || ||||| |||              ||||    
T  18739578 tttattatttgttgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcacaattattttttataaccattg--------------gctc 18739493  T
Q  223 aaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctcc 322  Q
    |||  ||||||  |||||||||||| ||| ||||||||| | ||| |||||||||||||||||||||||| | |||||||||| |||| ||| |||||||    
T  18739492 aaatgctaaaaactcattccctattgttatgcctcatttcccttaatataaggaacaactcaccacaactctcatgtatatattcttcttttatttctcc 18739393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 38086076 - 38085975
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||||||| |||||||||||||||||||| || ||| ||||||    
T  38086076 agtattcaccaccaccaatcatggttaaaagaaaat-aaaacgacgtgtcatgttttaatttgttgtttgtaagaatgatagttagtttcgttcctacac 38085978  T
Q  117 aag 119  Q
    |||    
T  38085977 aag 38085975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 3671930 - 3671829
Alignment:
Q  19 tattcaccaccaccaatcatgattaaaagaa-aaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacaca 117  Q
    |||||||||||| |||||||| ||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||    
T  3671930 tattcaccaccatcaatcatggttaaaagaagaaaaaaaatgatgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacaca 3671831  T
Q  118 ag 119  Q
    ||    
T  3671830 ag 3671829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 118
Target Start/End: Original strand, 31470735 - 31470832
Alignment:
Q  19 tattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||| ||||||||||||  |||||| |||||||  ||||||||||| ||||||||||||||||||||||| ||| ||||||||    
T  31470735 tattcaccaccaccaatcatggttaaaagaaaaa--aaatgatgtgtcattatttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaa 31470832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 344 - 431
Target Start/End: Complemental strand, 35969558 - 35969473
Alignment:
Q  344 ctaaagatgggtcacgtaacttgctatataacacatagtattttccagtacagaaaaatctttgcacatataaattccttcacttcat 431  Q
    ||||||||||||||  ||||||||||||  |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  35969558 ctaaagatgggtcatataacttgctata--acacatagtattttccagcaaagaaaaatctttgcacatataaattccttcacttcat 35969473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 31470658 - 31470595
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||    
T  31470658 aatgacgtgtcatgttttaatttgttgtttgtaaaaatgatagttaggttcgttcctacacaag 31470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 34564390 - 34564447
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgt 181  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  34564390 tttattatttgttgttgatttaaccatgtgatatttacttagtcaaagccttatttgt 34564447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 42028647 - 42028586
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  42028647 gacgtgtcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaag 42028586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 15332854 - 15332918
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| || ||||||||||||||| |||||||| ||| |||||||||    
T  15332854 aatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaag 15332918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 36059282 - 36059343
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  36059282 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaag 36059343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 31860151 - 31860087
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||| |||| |||||| |||||||| ||| |||||||||    
T  31860151 aatgacgtgtcatgttttaatttgttgtttataaggatgataggttaggttcgttcctacacaag 31860087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 38086159 - 38086222
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||| |||| |||||||||||| ||||||||||||||| |||||||||||  ||||||||    
T  38086159 aatgacgtatcatattttaatttgttgtttgtaagaatgatatgttaggtttgtccctacacaa 38086222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 305
Target Start/End: Original strand, 34564454 - 34564544
Alignment:
Q  215 gttggctcaaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatat 305  Q
    ||||| |||||  ||||||  |||||||||||| ||| ||||||||| | ||| |||||||||||||  ||||||||| | ||||||||||    
T  34564454 gttgggtcaaatgctaaaaactcattccctattgttatgcctcatttcccttaatataaggaacaacgtaccacaactctcatgtatatat 34564544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 13280030 - 13280091
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  13280030 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 13280091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 42028773 - 42028834
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  42028773 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 42028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 15330505 - 15330457
Alignment:
Q  71 tttaatttgttatttgtaagaatgatagttaggtttgtttctacacaag 119  Q
    |||||||| || ||||||||||||||||||||||| ||| |||||||||    
T  15330505 tttaatttattgtttgtaagaatgatagttaggttcgttcctacacaag 15330457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 16115236 - 16115299
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    ||||| ||||||| ||||| |||||| ||||||||||||||| |||||||| ||| ||||||||    
T  16115236 aatgaagtgtcatattttagtttgttgtttgtaagaatgataggttaggttcgttcctacacaa 16115299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 7317833 - 7317891
Alignment:
Q  62 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||| || |||||||| |||||| |||||||| ||| |||||||||    
T  7317833 gtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaag 7317891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 119
Target Start/End: Original strand, 31860283 - 31860341
Alignment:
Q  62 gtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||| |||||||| ||| || |||||||| ||| |||||||||    
T  31860283 gtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaag 31860341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 3672015 - 3672056
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||||||| || |||||||||||||||||||| |||||||    
T  3672015 aatgacgtgttatattttaatttgttatttgtaaaaatgata 3672056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 13279901 - 13279848
Alignment:
Q  67 atgttttaatttgttatttgtaagaatgatag-ttaggtttgtttctacacaag 119  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||| |||||||||    
T  13279901 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaag 13279848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 2059679 - 2059739
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||||| ||| | ||||||    
T  2059679 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttccaacacaa 2059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 7317704 - 7317644
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||||||||||| |||||| || ||||| |||||| |||||||| ||| ||||||||    
T  7317704 gacgtgtcatgttttagtttgttgttagtaaggatgataggttaggttcgttcctacacaa 7317644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 16115115 - 16115055
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||||| |||  |||||||    
T  16115115 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcttacacaa 16115055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 6e-44; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 127 - 325
Target Start/End: Complemental strand, 21185743 - 21185545
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtttaaccgttgatgtttggcggttggctcaaag 226  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||| | |||||| | |||| ||||||||||  | ||| | ||||||    
T  21185743 attatttattgttgatttaaccatgtgatatttacttagtcaaaaccttatttgtcatatttatttatgtaacggttgatgtttatcagtttggtcaaag 21185644  T
Q  227 actaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctccaaa 325  Q
     || ||||  ||||||||||| ||| ||||||||| | ||| || ||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||    
T  21185643 gcttaaatcacattccctattgttatgcctcatttcccttaatacaaggaacaactcaccacaactttaatgaatatatccttcttttatttctccaaa 21185545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 14193478 - 14193580
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  14193478 agtattcaccaccaccaatcatggttaaaagaagaaaaaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 14193577  T
Q  117 aag 119  Q
    |||    
T  14193578 aag 14193580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 2814353 - 2814251
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  2814353 agtattcaccaccaccaatcatggttaaaagaaaaaaaaaacgacgtgtcatgatttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 2814254  T
Q  117 aag 119  Q
    |||    
T  2814253 aag 2814251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 41539925 - 41540026
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  41539925 agtattcaccaccaccaatcatgattaaaagaaaat-aaaacgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 41540023  T
Q  117 aag 119  Q
    |||    
T  41540024 aag 41540026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 397116 - 397015
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||| |||||||||||| || ||||||||||||||||||||||| ||| || |||    
T  397116 agtattcaccaccaccaatcatggttaaaagaaaaa-aaaacaacgtgttatgttttaatttattgtttgtaagaatgatagttaggttcgttcctgcac 397018  T
Q  117 aag 119  Q
    |||    
T  397017 aag 397015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 325
Target Start/End: Complemental strand, 1789371 - 1789183
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtt-taaccgttgatgtttggcggttggctc 222  Q
    |||||| |||||||||||||| ||||||||||||||||||| ||||| |||||||||||| | |||||| || |||||              ||||| ||    
T  1789371 tttattgtttgttgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcacatttattttttataacc--------------gttgggtc 1789286  T
Q  223 aaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctcc 322  Q
    |||  ||||||  |||||||||| | ||| ||||||||| | ||| |||||||||||||||||||||| | | |||||||||| |||| ||| |||||||    
T  1789285 aaatgctaaaaactcattccctagtgttatgcctcatttcccttaatataaggaacaactcaccacaaatctcatgtatatattcttcttttatttctcc 1789186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 397197 - 397261
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||    
T  397197 aatgacgtgtcatgttttaatttgttgtttataagaatgatatgttaggttcgtttctacacaag 397261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 2814436 - 2814500
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  2814436 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaag 2814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 4327356 - 4327299
Alignment:
Q  135 ttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttattt 192  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||||||    
T  4327356 ttgttgatttaaccatgtgatatttacttagtcaaaaccttatttgccaaatttattt 4327299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 41539839 - 41539778
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||| |||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  41539839 gacgtgtcatattttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaag 41539778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 37994903 - 37994964
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||| || |||||||| |||||| |||||||| ||| |||||||||    
T  37994903 gacgtgtcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaag 37994964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 37994777 - 37994716
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| |||||||||||||| || |||||||| |||||| |||||||| ||| |||||||||    
T  37994777 gacgtatcatgttttaatttattgtttgtaaggatgataggttaggttcgttcctacacaag 37994716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 48871355 - 48871255
Alignment:
Q  19 tattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  48871355 tattcaccaccaccaatcatggttaaaagaaaaaaaaaatgatgtgtcatgttttaatttgttatttgtaagaatgatagttaggttcgttcctacacaa 48871256  T
Q  119 g 119  Q
    |    
T  48871255 g 48871255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 4157002 - 4156900
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||  || ||||||    
T  4157002 agtattcaccaccaccaatcatggttaaaagaaaaaaaaaatgacgtgtcatgttttaatttattatttgtaagaatgatagttaggttccttcctacac 4156903  T
Q  117 aag 119  Q
    |||    
T  4156902 aag 4156900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 48752548 - 48752649
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||    
T  48752548 agtattcaccaccaccaatcatgattaaaagaaaat-aaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcatacac 48752646  T
Q  117 aag 119  Q
    |||    
T  48752647 aag 48752649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 23346574 - 23346675
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||| ||| ||||||    
T  23346574 agtattcaccaccaccaatcatggttaaaagaaaaaaaaaatgacatgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctacac 23346673  T
Q  117 aa 118  Q
    ||    
T  23346674 aa 23346675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 28217637 - 28217540
Alignment:
Q  19 tattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacaca 117  Q
    ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||    
T  28217637 tattcaccaccaccaatcatggttaaaagaaaaa-aaaatgacgtgtcatgttttaatttgttgtttgtaagaatgataattaggttcgttcctacaca 28217540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 15 - 119
Target Start/End: Complemental strand, 42180683 - 42180579
Alignment:
Q  15 tcagtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctac 114  Q
    |||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| ||||||| |||| |||||||||| ||| ||||    
T  42180683 tcagtattcaccactaccaatcatggttaaaagaaaaaaaatatgacgtgtcatgttttaatttgttgtttgtaataatgctagttaggttcgttcctac 42180584  T
Q  115 acaag 119  Q
    |||||    
T  42180583 acaag 42180579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 50893118 - 50893218
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    |||||||||||||| |||||||| ||||||||||||  |||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  50893118 agtattcaccaccatcaatcatggttaaaagaaaaa--aaatgatgtgtcatgttttaatttgttgtttgtaataatgatagttaggttcgttcctacac 50893215  T
Q  117 aag 119  Q
    |||    
T  50893216 aag 50893218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 7062149 - 7062251
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaa-tgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctaca 115  Q
    |||||||||||||| |||||||| |||||||||||| |||| ||||||||||| |||||||||||| ||||||| ||||||||||||||| ||| |||||    
T  7062149 agtattcaccaccatcaatcatggttaaaagaaaaaaaaaaatgacgtgtcatattttaatttgttgtttgtaaaaatgatagttaggttcgttcctaca 7062248  T
Q  116 caa 118  Q
    |||    
T  7062249 caa 7062251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 41834027 - 41834131
Alignment:
Q  15 tcagtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctac 114  Q
    |||||||||||||  | |||||||| |||||| ||||| || ||||||||||||||||||||||||| ||||||| |||| |||||| ||| ||| ||||    
T  41834027 tcagtattcaccattatcaatcatggttaaaaaaaaaaaaatatgacgtgtcatgttttaatttgttgtttgtaataatgctagttatgttcgttcctac 41834126  T
Q  115 acaag 119  Q
    |||||    
T  41834127 acaag 41834131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 23346493 - 23346427
Alignment:
Q  54 aaaatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||||| || ||||||||||||||| |||||||| ||| |||||||||    
T  23346493 aaaatgacgtgtcatgttttaatttattgtttgtaagaatgatatgttaggttcgttcctacacaag 23346427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 1968468 - 1968533
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttattt 192  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||| |||||||| ||||| ||||||    
T  1968468 attattttttgttgatttaaccatgtgatatttacttagtcaaagccttatttatcaaatttattt 1968533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 39669254 - 39669314
Alignment:
Q  60 acgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||| ||||||||||||||| |||| ||| |||||||||||||    
T  39669254 acgtgtcatgttttaatttgttctttgtaagaatgatatgttaagttcgtttctacacaag 39669314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 50893035 - 50892972
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||| ||||||||    
T  50893035 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaagttcgttgctacacaa 50892972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 7062079 - 7062038
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  7062079 aatgacgtgtcatgttttaatttgttgtttgtaagaatgata 7062038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 19059443 - 19059382
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  19059443 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 19059382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 39669150 - 39669084
Alignment:
Q  32 caatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagtt 100  Q
    |||||||| ||||||||||||  ||||||||| |||| ||||||||| || ||||||||||||||||||    
T  39669150 caatcatggttaaaagaaaaa--aaatgacgtatcatattttaatttattgtttgtaagaatgatagtt 39669084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 10227904 - 10227968
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| |||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  10227904 aatgatgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 10227968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 48871429 - 48871493
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||  ||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  48871429 aatgacgtgcaatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaag 48871493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 28217711 - 28217774
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    ||||| |||||||||||| ||||||| ||||||||||||||| |||||||| ||| ||||||||    
T  28217711 aatgatgtgtcatgttttgatttgttgtttgtaagaatgatatgttaggttcgttcctacacaa 28217774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 50905104 - 50905167
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    |||||||| ||||||||||||||||| ||||||||||||||| ||||| || |||| |||||||    
T  50905104 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttagattcgtttttacacaa 50905167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 10227781 - 10227720
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| ||| || |||||||| ||| |||||||||    
T  10227781 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaag 10227720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 41833946 - 41833905
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||||||||||||||||||||||| | |||||||||||||    
T  41833946 aatgacgtgtcatgttttaatttgttgtgtgtaagaatgata 41833905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 1953386 - 1953450
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatt 191  Q
    ||||||| |||||||||| ||||||||||||||||| | |||||  || |||||||||| |||||    
T  1953386 attattttttgttgatttaaccatgtgatatttactaagtcaaagtctcatttgtcaaatttatt 1953450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 42180764 - 42180819
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttc 111  Q
    ||||| ||||||||||||| |||||| ||||||||||||||| |||| || |||||    
T  42180764 aatgatgtgtcatgttttagtttgttgtttgtaagaatgatatttagattcgtttc 42180819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 26552187 - 26552248
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||| |||||||||||| |||||||| |||||| |||||||| | | |||||||||    
T  26552187 gacgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgatcctacacaag 26552248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 50905065 - 50905024
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||||||||||||||||| ||||| ||||||| |||||||    
T  50905065 aatgacgtgtcatgttttaacttgttgtttgtaaaaatgata 50905024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 16979571 - 16979673
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||    
T  16979571 agtattcaccaccaccaattatggttaaaagaaaaaaaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttagattcgttcctacac 16979670  T
Q  117 aag 119  Q
    |||    
T  16979671 aag 16979673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 7298790 - 7298892
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| ||||  |||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  7298790 agtattcaccaccaccaatcatggttaaaagaaaaaaaaaaatacgtgttatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 7298889  T
Q  117 aag 119  Q
    |||    
T  7298890 aag 7298892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 46568067 - 46567965
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||| ||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||    
T  46568067 agtattcactaccaccaatcatagttaaaagaaaaataaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaagttcgttcctacac 46567968  T
Q  117 aag 119  Q
    |||    
T  46567967 aag 46567965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 28948957 - 28949060
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaa--aagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctac 114  Q
    ||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||    
T  28948957 agtattcaccaccaccaatcatggttaaaagaaagaaaaaaaatgacgtgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctac 28949056  T
Q  115 acaa 118  Q
    ||||    
T  28949057 acaa 28949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 40521126 - 40521024
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    |||||||||||| |||||||||| |||||||||||| |  |||||||||||| |||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  40521126 agtattcaccactaccaatcatggttaaaagaaaaaaattatgacgtgtcatattttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 40521027  T
Q  117 aag 119  Q
    |||    
T  40521026 aag 40521024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 11673647 - 11673837
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtttaaccgttgatgtttggcggttggctca 223  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||  ||||||||||| | |||||| ||| |          |  ||| |||| |||    
T  11673647 tttattatttgttgttgatttaaccatgtgatatttacttagtcaaagtcttatttgtcacaattatttttttta----------taagcg-ttgggtca 11673735  T
Q  224 aagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctcca 323  Q
    ||  ||||||  |||||||||||| ||| ||||||||| | ||| || | ||||||||||||||||||| |||||||||||| |||| ||| ||||||||    
T  11673736 aatgctaaaagctcattccctattgttatgcctcatttcccttactacagggaacaactcaccacaactctgatgtatatattcttcttttatttctcca 11673835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 47478466 - 47478370
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    |||||||||||||| |||||||| ||||||||||||  |||||| |||||||||   |||||||| ||||||||||||||||||| ||| ||||||||||    
T  47478466 agtattcaccaccatcaatcatggttaaaagaaaaa--aaatgatgtgtcatgt---aatttgttgtttgtaagaatgatagttaagttcgtttctacac 47478372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 221 - 292
Target Start/End: Complemental strand, 3850944 - 3850873
Alignment:
Q  221 tcaaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaact 292  Q
    |||||| || |||| |||||||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||    
T  3850944 tcaaaggcttaaatctcattccctattattatgcctcatgttccttaatataaggaacaactcaccacaact 3850873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 7298707 - 7298643
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||| |||||||||    
T  7298707 aatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaag 7298643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 40521208 - 40521272
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  40521208 aatgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaag 40521272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 171
Target Start/End: Complemental strand, 39426672 - 39426628
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaa 171  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||    
T  39426672 attattttttgttgatttaaccatgtgatatttacttaatcaaaa 39426628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 19805609 - 19805670
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||||||| |||| |||||| |||| ||| ||| |||||||||    
T  19805609 gacgtgtcatgttttaatttgttatttataaggatgataggttaagttcgttcctacacaag 19805670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 46568150 - 46568191
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    ||||| |||||||||||||||||||| |||||||||||||||    
T  46568150 aatgatgtgtcatgttttaatttgttgtttgtaagaatgata 46568191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 3851049 - 3850991
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaa 185  Q
    |||||||||||||||||| | || |||||||||||||| |||||  ||||||| |||||    
T  3851049 attatttgttgttgatttaatcaagtgatatttacttagtcaaagtcttatttatcaaa 3850991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 21389176 - 21389277
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  21389176 agtattcaccaccaccaatcatggttaaaagaaaaa-aaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 21389274  T
Q  117 aag 119  Q
    |||    
T  21389275 aag 21389277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 124 - 325
Target Start/End: Complemental strand, 19698312 - 19698124
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtt-taaccgttgatgtttggcggttggctc 222  Q
    ||||||||||||||||||||| ||||||| ||||||||||| ||||| |||||||||||| | |||||| || |||||||||              | ||    
T  19698312 tttattatttgttgttgatttaaccatgttatatttacttagtcaaagccttatttgtcacaattattttttataaccgttg--------------ggtc 19698227  T
Q  223 aaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcatttctttctcc 322  Q
    |||  ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||||| |||||||||| |||| ||| |||||||    
T  19698226 aaatgctaaaaattcattccctattattatgcctcatttcccttaatataaggaacaactcaccacaactttcatgtatatattcttcttttatttctcc 19698127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 7789779 - 7789678
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaa--atgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctac 114  Q
    ||||||||||||||||||||||| |||||||||||| |||  ||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| ||||    
T  7789779 agtattcaccaccaccaatcatggttaaaagaaaaaaaaacaatgacatgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctac 7789680  T
Q  115 ac 116  Q
    ||    
T  7789679 ac 7789678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 6950189 - 6950124
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttattt 192  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||    
T  6950189 attattttttgttgatttaaccatgtgatatttacttagtcaaagccttatttgtcaaatttattt 6950124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 7789862 - 7789926
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||  || |||||||||    
T  7789862 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcattcctacacaag 7789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 33022363 - 33022424
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  33022363 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaag 33022424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 21389093 - 21389033
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctaca 115  Q
    |||||||| ||||||||||||||||| ||||||||||||||| |||||||| ||| |||||    
T  21389093 aatgacgtatcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctaca 21389033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 33022233 - 33022173
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| ||||||||    
T  33022233 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaa 33022173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 9e-34; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 19897335 - 19897234
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  19897335 agtattcaccaccaccaatcatggttaaaagagaaaaaatatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacac 19897236  T
Q  117 aa 118  Q
    ||    
T  19897235 aa 19897234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 35454559 - 35454459
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||| |||  |||||    
T  35454559 agtattcaccaccaccaatcatggttaaaagaaaaa--aaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcatacac 35454462  T
Q  117 aag 119  Q
    |||    
T  35454461 aag 35454459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 5146612 - 5146513
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||||| || ||||||||||||||||||||||| ||| ||||||    
T  5146612 agtattcaccaccaccaatcatggttaaaagaaaaa--aaataacgtgtcatgttttaatttattgtttgtaagaatgatagttaggttcgttcctacac 5146515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 119
Target Start/End: Original strand, 14388494 - 14388575
Alignment:
Q  37 atgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaag 119  Q
    |||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  14388494 atgattaaaagaaaat-aaaatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggtttgttcctacacaag 14388575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6518358 - 6518458
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| ||||||| ||||  |||||| || |||| |||||||||||| ||||||||||||||||||||||| ||| ||||||    
T  6518358 agtattcaccaccaccaatcatggttaaaaggaaaa--aaatgatgtatcatattttaatttgttgtttgtaagaatgatagttaggttcgttactacac 6518455  T
Q  117 aag 119  Q
    |||    
T  6518456 aag 6518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 27319585 - 27319488
Alignment:
Q  20 attcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaa 118  Q
    |||||||||||||||||||| |||||||||||  ||||| |||| |||||||||||||| |||||||||||||||||||||| |||  || ||||||||    
T  27319585 attcaccaccaccaatcatggttaaaagaaaat-aaaataacgtatcatgttttaatttattatttgtaagaatgatagttaagttcattactacacaa 27319488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 13823257 - 13823158
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||| ||| || ||| || |||||||||||||||| ||| ||||||    
T  13823257 agtattcaccaccaccaatcatggttaaaagaaaaa--aaat-acgtgtcatgttttagtttattgtttatacgaatgatagttaggttcgttcctacac 13823161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 35454642 - 35454705
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  35454642 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatagttaggttcgttcctacacaag 35454705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 5146695 - 5146759
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| |||||||||||||||  ||||||| |||||||||||||    
T  5146695 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgtttctacacaag 5146759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 60 - 119
Target Start/End: Complemental strand, 14069928 - 14069869
Alignment:
Q  60 acgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||| |||||||||    
T  14069928 acgtgtcatgttttaatttgttgtttataagaatgatagttaggttcgttcctacacaag 14069869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 228926 - 229038
Alignment:
Q  18 gtattcaccaccaccaatcatgattaaaagaaa----aagaaaatgacgtgtcatgt--------tttaatttgttatttgtaagaatgatagttaggtt 105  Q
    |||||||||||||||||||||| ||||||||||    || |||| ||||||||||||        ||||||||||| ||||||||||||||||||| |||    
T  228926 gtattcaccaccaccaatcatggttaaaagaaagaaaaaaaaaacgacgtgtcatgttttaatgttttaatttgttgtttgtaagaatgatagttatgtt 229025  T
Q  106 tgtttctacacaa 118  Q
     ||||||||||||    
T  229026 cgtttctacacaa 229038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 33377755 - 33377686
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgt 87  Q
    ||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||||||| || |||||    
T  33377755 agtattcaccaccaccaatcatggttaaaagaaaaa-ataataacgtgtcatgttttaatttattgtttgt 33377686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 8489195 - 8489131
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||| |||||||||    
T  8489195 aatgacgtgtcatattttaatttgttgtttgtaagaatgatatgttagatttgttcctacacaag 8489131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 13823340 - 13823404
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||| |||||||||    
T  13823340 aatgacgtgtcatgttttaatttgttatttgtaaaaatgatatgttaagttcgttcctacacaag 13823404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 33377840 - 33377900
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctaca 115  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||    
T  33377840 aatgacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctaca 33377900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 8323903 - 8323964
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  8323903 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaag 8323964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 26534693 - 26534754
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  26534693 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 26534754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 40881862 - 40881801
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||||| || ||||||||||| || |||||||| ||| ||||||||    
T  40881862 aatgacgtgtcatgttttaatttattgtttgtaagaataat-gttaggttcgttcctacacaa 40881801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 6518264 - 6518211
Alignment:
Q  67 atgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  6518264 atgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctacacaag 6518211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 26534575 - 26534514
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| ||||||||  ||||| |||||||| ||| |||||||||    
T  26534575 gacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaag 26534514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 791661 - 791601
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||||| |||||||| ||| || |||||||| ||| ||||||||    
T  791661 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggttaggttcgttcctacacaa 791601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 19898946 - 19899010
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||| ||||||||||||||||||| ||| ||| ||||||| |||||||| ||| |||||||||    
T  19898946 aatgacatgtcatgttttaatttgttgtttataaaaatgatatgttaggttcgttcctacacaag 19899010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 228785 - 228727
Alignment:
Q  60 acgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacaca 117  Q
    ||||||||||||||||||| || ||| ||||||||||| |||||||| ||| |||||||    
T  228785 acgtgtcatgttttaatttattgtttataagaatgatatgttaggttcgttcctacaca 228727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 130323 - 130262
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| ||||||||  ||| | |||||||| ||| |||||||||    
T  130323 gacgtgtcatgttttaatttgttgtttgtaaggttgacaggttaggttcgttcctacacaag 130262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 115
Target Start/End: Original strand, 130443 - 130500
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctaca 115  Q
    ||||||| ||||||||||||||| |||||||| |||||| |||||||| ||| |||||    
T  130443 gacgtgttatgttttaatttgttgtttgtaaggatgataggttaggttcgttactaca 130500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 8323776 - 8323715
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||| || |||||||  |||||| |||||||| ||| |||||||||    
T  8323776 gacgtgtcatgttttaatttattgtttgtaaagatgataggttaggttcgttcctacacaag 8323715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 40882015 - 40882052
Alignment:
Q  60 acgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  40882015 acgtgtcatattttaatttgttgtttgtaagaatgata 40882052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 42630783 - 42630719
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||| |||||| |||||||| |||||| |||||||| |||  ||||||||    
T  42630783 aatgaagtgtcatgttttagtttgttgtttgtaaggatgataggttaggttcgttcatacacaag 42630719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 18936786 - 18936684
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||||||| ||| |||  |||||    
T  18936786 agtattcaccaccaccaatcatgattaaaagaagaaaaaaatgacgtatcatgttttaatttgttgtttgtaagaatgatagttatgttcgttcatacac 18936687  T
Q  117 aag 119  Q
    |||    
T  18936686 aag 18936684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 115
Target Start/End: Original strand, 11147174 - 11147276
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaa----aagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttct 112  Q
    ||||||||||||||||||||||| ||||||||||    || |||||||| |||||| ||||||||| || ||||||||||| |||||||| || ||||||    
T  11147174 agtattcaccaccaccaatcatggttaaaagaaagaaaaaaaaaatgacatgtcatattttaatttattgtttgtaagaataatagttagattcgtttct 11147273  T
Q  113 aca 115  Q
    |||    
T  11147274 aca 11147276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 5121000 - 5121063
Alignment:
Q  57 atgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  5121000 atgatgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggtttgttcctacacaag 5121063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 37177735 - 37177654
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaaga-aaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||| ||||||||||||||| ||||||||| |||| ||||| || |||||| ||||||||| || |||||||||||||||    
T  37177735 agtatttaccaccaccaatcataattaaaagaaaaaaaaaaattacatgtcatattttaatttattgtttgtaagaatgata 37177654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 3102735 - 3102796
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  3102735 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 3102796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 11147083 - 11147022
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||||||||||  ||||||| ||| |||||||||    
T  11147083 gacgtgtcatgttttaatttgttgtttgtaagaatgatatattaggttcgttcctacacaag 11147022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 40534032 - 40533971
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||    
T  40534032 gacgtatcatgttttaatttgttgtttgtaagaatgataggttaggttcgttcctacacaag 40533971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 40534158 - 40534219
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  40534158 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 40534219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 3102609 - 3102548
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  3102609 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 3102548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 13690284 - 13690223
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  13690284 gacgtatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 13690223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 18936869 - 18936910
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    ||||||||||||||||||||||| || |||||||||||||||    
T  18936869 aatgacgtgtcatgttttaatttattgtttgtaagaatgata 18936910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 37177818 - 37177859
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata 97  Q
    |||||||| ||||||||||||||||| |||||||||||||||    
T  37177818 aatgacgtatcatgttttaatttgttgtttgtaagaatgata 37177859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 18381501 - 18381565
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||||||||||||||||  |||||||||||| | |||||||| ||| |||||||||    
T  18381501 aatgatgtgtcatgttttaatttgttgcttgtaagaatgaaatgttaggttcgttcctacacaag 18381565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 9231649 - 9231588
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| ||| || | |||||| ||| |||||||||    
T  9231649 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaag 9231588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 17 - 119
Target Start/End: Complemental strand, 36635347 - 36635246
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaaagaaaatgacgtgtcatgttttaatttgttatttgtaagaatgatagttaggtttgtttctacac 116  Q
    ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||    
T  36635347 agtattcaccaccaccaatcatggttaaaagaaaaaaaaaat-acgtgtcatgttttaatttgttgtttgtaacaatgatagttaggttcgttcctacac 36635249  T
Q  117 aag 119  Q
    |||    
T  36635248 aag 36635246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 127 - 292
Target Start/End: Complemental strand, 11634673 - 11634497
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatt-----------tgtttaaccgttgatgtttggcgg 215  Q
    |||||||||||||||||| | ||||||||||||||||| ||||| || ||||| ||||| |||||           | | ||||  |||||  ||| |||    
T  11634673 attatttgttgttgatttaatcatgtgatatttacttagtcaaagccctatttatcaaatttattatatatttatttttctaactattgatacttgacgg 11634574  T
Q  216 ttggctcaaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaact 292  Q
    || | |||||| || |||| |||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||    
T  11634573 tttggtcaaaggcttaaatctcattccctattattatgcctcattttccttaatataaggaacaactcaccacaact 11634497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 11640603 - 11640520
Alignment:
Q  231 aaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaactttgatgtatatatccttcattt 314  Q
    |||| ||||||||| |||||| ||||||||||| ||| |||||||||||||||||||||||| | |   |||||||||||||||    
T  11640603 aaatctcattccctgttattatgcctcattttccttaatataaggaacaactcaccacaactctcacagatatatccttcattt 11640520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 36635430 - 36635494
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||| |||||||||    
T  36635430 aatgacgtgtcatgttttaatttgttgtttgtaaaaatgatatgttaggttcgttcctacacaag 36635494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 27073103 - 27073164
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  27073103 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 27073164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 33214512 - 33214451
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  33214512 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 33214451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Original strand, 19580502 - 19580566
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||| ||| |||||    
T  19580502 aatgacatgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctatacaag 19580566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 36274188 - 36274128
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaa 118  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| ||||||||    
T  36274188 gacgtgtcatgttttaatttgttgtttgtaaggatgatatgttaggttcgttcctacacaa 36274128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 10598877 - 10598816
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||  |||||| |||||||| ||| |||||||||    
T  10598877 gacgtgtcatgttttaatttgttgtttgtaaagatgataggttaggttcgttcctacacaag 10598816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 11641201 - 11641136
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttattt 192  Q
    ||||||||||||||||||  | |||||||||||| ||| ||||| | |||||||||||| ||||||    
T  11641201 attatttgttgttgatttatcaatgtgatatttatttagtcaaagcgttatttgtcaaatttattt 11641136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 33214634 - 33214695
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| ||||||||  ||||| |||||||| ||| |||||||||    
T  33214634 gacgtgtcatgttttaatttgttgtttgtaaggttgataggttaggttcgttcctacacaag 33214695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 192
Target Start/End: Complemental strand, 42258264 - 42258199
Alignment:
Q  127 attatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttattt 192  Q
    ||||||| ||||| |||| |||||||||||||||| || ||||| |||||||| ||||| ||||||    
T  42258264 attatttattgttaatttaaccatgtgatatttacctagtcaaagccttatttatcaaatttattt 42258199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 33219144 - 33219080
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||  ||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  33219144 aatgacgaatcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 33219080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 10599000 - 10599054
Alignment:
Q  66 catgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    |||||||||||||||| |||||||| |||||| |||||||| ||||| |||||||    
T  10599000 catgttttaatttgttgtttgtaaggatgatatgttaggttcgtttccacacaag 10599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 19580419 - 19580385
Alignment:
Q  17 agtattcaccaccaccaatcatgattaaaagaaaa 51  Q
    ||||||||||||||||||||||| |||||||||||    
T  19580419 agtattcaccaccaccaatcatggttaaaagaaaa 19580385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 27072974 - 27072921
Alignment:
Q  67 atgttttaatttgttatttgtaagaatgatag-ttaggtttgtttctacacaag 119  Q
    ||||||||||||||| |||||||| ||||||| ||||||| ||| |||||||||    
T  27072974 atgttttaatttgttgtttgtaaggatgatagattaggttcgttcctacacaag 27072921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 15958 - 15855
Alignment:
Q  19 tattcaccaccaccaatcatgattaaaagaaaaagaaa--atgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctaca 115  Q
    |||||||||| |||||||||| |||||||||||| |||  || |||||||||||||||||||||| ||||||||||||||| |||||||| ||| |||||    
T  15958 tattcaccactaccaatcatggttaaaagaaaaaaaaataataacgtgtcatgttttaatttgttgtttgtaagaatgatatgttaggttcgttcctaca 15859  T
Q  116 caag 119  Q
    ||||    
T  15858 caag 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 124 - 325
Target Start/End: Original strand, 86670 - 86860
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttacttaatcaaaaccttatttgtcaaacttatttgtt-taaccgttgatgtttggcggttggctc 222  Q
    |||||||||||||  |||||| ||||||||||||||||||| ||||| ||||| |||||| | |||||| || |||||||||              | ||    
T  86670 tttattatttgttagtgatttaaccatgtgatatttacttagtcaaagccttacttgtcacaattattttttataaccgttg--------------ggtc 86755  T
Q  223 aaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaacttt--gatgtatatatccttcatttctttct 320  Q
    |||  ||||||  |||||||||||| ||| ||||||||| | ||| |||||||||||||||||||||||| |   |||||||||| |||| ||| |||||    
T  86756 aaatgctaaaaactcattccctattgttatgcctcatttcccttaatataaggaacaactcaccacaactctcatatgtatatattcttcttttatttct 86855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 82344 - 82456
Alignment:
Q  215 gttggctcaaagactaaaatatcattccctattattaagcctcattttctttagtataaggaacaactcaccacaacttt--gatgtatatatccttcat 312  Q
    ||||| |||||  ||||||  |||||||||||| ||| ||||||||  | ||| |||||||||||||||||||||||| |   |||||||||| |||| |    
T  82344 gttgggtcaaatgctaaaaactcattccctattgttatgcctcattgcccttaatataaggaacaactcaccacaactctcgtatgtatatattcttctt 82443  T
Q  313 ttctttctccaaa 325  Q
    || ||||||||||    
T  82444 ttatttctccaaa 82456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 82271 - 82311
Alignment:
Q  124 tttattatttgttgttgatttcaccatgtgatatttactta 164  Q
    ||||||||||||||||||||| || ||||||||||||||||    
T  82271 tttattatttgttgttgatttaacgatgtgatatttactta 82311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 11822 - 11883
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  11822 gacgtgtcatgttttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 11883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0214; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 11698 - 11634
Alignment:
Q  56 aatgacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||| ||||||| |||||||||||| |||||||| |||||| |||||||| ||| |||||||||    
T  11698 aatgatgtgtcatattttaatttgttgtttgtaaggatgataggttaggttcgttcctacacaag 11634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 119
Target Start/End: Complemental strand, 37515 - 37454
Alignment:
Q  59 gacgtgtcatgttttaatttgttatttgtaagaatgata-gttaggtttgtttctacacaag 119  Q
    ||||||||||||||||||||||| |||||||| ||| || | |||||| ||| |||||||||    
T  37515 gacgtgtcatgttttaatttgttgtttgtaaggatggtaggctaggttcgttcctacacaag 37454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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