View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14981_low_8 (Length: 426)
Name: NF14981_low_8
Description: NF14981
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14981_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 48394659 - 48395074
Alignment:
| Q |
1 |
ctacaatttgcattcaaagtaacaacaacattccaagcaaactaggattctcaactaataacgttgttttttctgtgaaactaccgcgtaaactatgtat |
100 |
Q |
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| T |
48394659 |
ctacaatttgcattcaaagtaaca---acattccaagcaaactaggattctcagctaataacgttgttttttctgtgaaactaccgcgtaaactatgtat |
48394755 |
T |
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| Q |
101 |
cagaagctctagtgaaaactctgcaggttcaacagaggttgagtcagagagttccattgaacttccaaaagaatcatcttctttaatttctgttctcaac |
200 |
Q |
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| T |
48394756 |
cagaagctctagtgaaaactctgcaggttcaacagaggttgagtcagagagttccattgaacttccaaaagaatcatcttctttaatttctgttctcaac |
48394855 |
T |
|
| Q |
201 |
gtagaaagagctctccgtggcatacgtaagttttccataatcttgttgttattatatacgtaaa----------attgcattcaattgaattgatgaaga |
290 |
Q |
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| T |
48394856 |
gtagaaagagctctccgtggcatacgtaagttttccataatcttgttgttattatatacctaaaattgcattgcattgcattgaattgaattgatgaaga |
48394955 |
T |
|
| Q |
291 |
tatggtttagaatgcagctattacggatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtcagaaacattttatatcgg |
390 |
Q |
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| T |
48394956 |
tatggtttagaatgcagctattacagatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtcagaaacattttatatcgg |
48395055 |
T |
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| Q |
391 |
atttaattcatatatacct |
409 |
Q |
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| T |
48395056 |
atttaattcatatatacct |
48395074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 308
Target Start/End: Original strand, 48414116 - 48414145
Alignment:
| Q |
279 |
aattgatgaagatatggtttagaatgcagc |
308 |
Q |
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| T |
48414116 |
aattgatgaagatatggtttagaatgcagc |
48414145 |
T |
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