View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14982_high_3 (Length: 259)

Name: NF14982_high_3
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14982_high_3
NF14982_high_3
[»] chr3 (2 HSPs)
chr3 (15-240)||(39427513-39427726)
chr3 (108-240)||(37462443-37462572)
[»] chr5 (1 HSPs)
chr5 (90-240)||(36224348-36224501)
[»] chr2 (7 HSPs)
chr2 (106-240)||(8579546-8579677)
chr2 (108-240)||(9061200-9061329)
chr2 (197-237)||(17566145-17566185)
chr2 (197-240)||(7611979-7612022)
chr2 (108-151)||(9274475-9274518)
chr2 (197-240)||(9364668-9364711)
chr2 (110-159)||(9291899-9291948)
[»] chr4 (1 HSPs)
chr4 (104-240)||(561172-561305)
[»] chr7 (2 HSPs)
chr7 (111-159)||(45243656-45243704)
chr7 (111-240)||(45237907-45238033)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 39427513 - 39427726
Alignment:
Q  15 cataggtaactttataacttttgagatgataccaaaacagcttcttcttaagcttcttcttaagatcactcatgaaatcacccctaaattctacttccaa 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||            |||||||| |||||||| |||||||||||||||||| |||||||||    
T  39427513 cataggtaactttataacttttgagataataccaaaacagct------------tcttcttaggatcactcttgaaatcacccctaaattttacttccaa 39427600  T
Q  115 cagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaatttacaccaa 214  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  39427601 cagaactttacttctatcactggaataacataaaggcttcaaagacattaaaggtgaattgaaacaccattcccctacaaaagtaaacaatttacaccaa 39427700  T
Q  215 ctatttctaaatccatattctttcat 240  Q
    |||| |||| ||||||||||||||||    
T  39427701 ctatatctatatccatattctttcat 39427726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 108 - 240
Target Start/End: Original strand, 37462443 - 37462572
Alignment:
Q  108 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaattt 207  Q
    ||||||||| ||| ||||||| |||||| ||||||||||||||| |||||||  | ||||||||| |||||||| ||| | | |||   ||| | | |||    
T  37462443 cttccaacaaaaccttacttccatcactagaataacataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccaca---gtacaaagttt 37462539  T
Q  208 acaccaactatttctaaatccatattctttcat 240  Q
    ||||||||||| |||| ||||||||||||||||    
T  37462540 acaccaactatctctagatccatattctttcat 37462572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 36224348 - 36224501
Alignment:
Q  90 aatcacccctaaattctacttccaacagaactttacttctatcactggaataacataaaggcatcaaagaca------ttaaaggtgaattgaaacacca 183  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |      | |||||||||| |||| ||||    
T  36224348 aatcaccccaaaattctacttccaacagaactttacttctatcactggaataacatgaaggcttcaaagatatcaatttaaaaggtgaatcgaaatacca 36224447  T
Q  184 ttgacctacaaatgtaaacaatttacaccaactatttctaaatccatattctttcat 240  Q
    ||  || ||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  36224448 tt--cccacaaa-gtaaacaatttacaccaactatctctaaatccatattctttcat 36224501  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 240
Target Start/End: Complemental strand, 8579677 - 8579546
Alignment:
Q  106 tacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaat 205  Q
    |||||||||||||||||||||||||||||| |||||||| |||||| |||||||  | ||||||  |||||| ||| | |  ||| |||| |||||||||    
T  8579677 tacttccaacagaactttacttctatcactagaataacacaaaggcttcaaagatctcaaaggtttattgaagcacgaat--cct-caaaagtaaacaat 8579581  T
Q  206 ttacaccaactatttctaaatccatattctttcat 240  Q
    ||||||||||||| |||||||||||||| ||||||    
T  8579580 ttacaccaactatctctaaatccatattttttcat 8579546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 240
Target Start/End: Complemental strand, 9061329 - 9061200
Alignment:
Q  108 cttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaattt 207  Q
    ||||||||||||| |||| || |||||| ||||||||||| ||| ||||| |    |||||||||||||||||| ||| |   || || ||||| | |||    
T  9061329 cttccaacagaaccttacctccatcactagaataacataacggcctcaaaaagtccaaaggtgaattgaaacacgattta---accaaagtaaaaagttt 9061233  T
Q  208 acaccaactatttctaaatccatattctttcat 240  Q
    ||||||||||| |||| ||||||| ||||||||    
T  9061232 acaccaactatctctagatccatagtctttcat 9061200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 17566185 - 17566145
Alignment:
Q  197 gtaaacaatttacaccaactatttctaaatccatattcttt 237  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  17566185 gtaaacaatttacaccaattatctctaaatccatattcttt 17566145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 7611979 - 7612022
Alignment:
Q  197 gtaaacaatttacaccaactatttctaaatccatattctttcat 240  Q
    |||||||||||||||||||||| | | |||||||||||||||||    
T  7611979 gtaaacaatttacaccaactatcttttaatccatattctttcat 7612022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 9274475 - 9274518
Alignment:
Q  108 cttccaacagaactttacttctatcactggaataacataaaggc 151  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||    
T  9274475 cttccaacagaaccttacttccatcactagaataacataaaggc 9274518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 9364668 - 9364711
Alignment:
Q  197 gtaaacaatttacaccaactatttctaaatccatattctttcat 240  Q
    |||||||||||||||||||||| | | |||||||||||||||||    
T  9364668 gtaaacaatttacaccaactatcttttaatccatattctttcat 9364711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 9291899 - 9291948
Alignment:
Q  110 tccaacagaactttacttctatcactggaataacataaaggcatcaaaga 159  Q
    ||||||||||| ||||||| ||| || ||||||||||||||| |||||||    
T  9291899 tccaacagaaccttacttccatccctagaataacataaaggcctcaaaga 9291948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 240
Target Start/End: Original strand, 561172 - 561305
Alignment:
Q  104 tctacttccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaaca 203  Q
    |||||||||||||||||||||||||||||||  ||||||| ||||||| || | |   | ||||||  | ||||| ||  ||  ||| |||| |||||||    
T  561172 tctacttccaacagaactttacttctatcaccagaataacctaaaggcttccatggtgtaaaaggtctactgaaaaacactt--cctccaaa-gtaaaca 561268  T
Q  204 atttacaccaactatttctaaatccatattctttcat 240  Q
    ||  ||||||||||| |||||||||||||||||||||    
T  561269 atacacaccaactatctctaaatccatattctttcat 561305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 45243656 - 45243704
Alignment:
Q  111 ccaacagaactttacttctatcactggaataacataaaggcatcaaaga 159  Q
    |||||||||||||||||| |||||| ||||||||||||||| |||||||    
T  45243656 ccaacagaactttacttcgatcactcgaataacataaaggcctcaaaga 45243704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 240
Target Start/End: Original strand, 45237907 - 45238033
Alignment:
Q  111 ccaacagaactttacttctatcactggaataacataaaggcatcaaagacattaaaggtgaattgaaacaccattgacctacaaatgtaaacaatttaca 210  Q
    |||||||||||||||||| ||| || ||||||||||||||| ||||  |  | | | |  ||||||||||| |||   | || || ||||| | ||||||    
T  45237907 ccaacagaactttacttcgatcgcttgaataacataaaggcctcaacaatttcagatgaaaattgaaacacgatt---caactaaagtaaaaagtttaca 45238003  T
Q  211 ccaactatttctaaatccatattctttcat 240  Q
    |||||||| |||| ||||||||||||||||    
T  45238004 ccaactatctctagatccatattctttcat 45238033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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