View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14982_low_1 (Length: 874)
Name: NF14982_low_1
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14982_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 4709958 - 4709593
Alignment:
| Q |
18 |
catatcggtgactggtgctataccttgtgtcatgcatcaactttatggaaggccttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatc |
117 |
Q |
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| T |
4709958 |
catatcggtgactggtgctataccttgtgtcatgcatcaactttatggaaggccttgcttagctcatgctttagttcaagcaaatgaaatcaaagttatc |
4709859 |
T |
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| Q |
118 |
taaattcaaaagacataccacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagataaaatttggagtttgtgattttgca |
217 |
Q |
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| T |
4709858 |
taaattcaaaagacataccacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagataaaatttggagtttgtgattttgca |
4709759 |
T |
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| Q |
218 |
ttacgggaagtattctggcttacagtgaccctgcataagacacagacattgaaaagtattttttagaaacagaagaactttggagagttgatggtctatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4709758 |
ttacgggaagtattctggcttacagtgaccctgcataagacacagacattgaaaagtattttttagaaacagaagaactttggagagttgatggtctatt |
4709659 |
T |
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| Q |
318 |
tttggggagagattaggttgattgnnnnnnnnagacgggacaactttaaagaaacaagtcaatatt |
383 |
Q |
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| T |
4709658 |
tttggggagagattaggttgattgttttttttagacgggacaactttaaagaaacaagtcaatatt |
4709593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 466 - 726
Target Start/End: Complemental strand, 4709509 - 4709249
Alignment:
| Q |
466 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
565 |
Q |
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| T |
4709509 |
ccatctccacttcgatgagtaacgcatttgtctttcaagcaattgatgttgattatatatgtttgtccaattactactgcaagaaaatggcatatgccaa |
4709410 |
T |
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| Q |
566 |
cggaggtttatagtgacggattttaaatcgtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
665 |
Q |
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| T |
4709409 |
cggaggtttatagtgacggattttaaatagtaggtatagaaaagctatacctatggagaaaagtattagtcgtaggtatagttaacccaaaaattaaaac |
4709310 |
T |
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| Q |
666 |
aatcaaatacattcgaagtagataaggtcacccagtgaaatgttaacaccgccaaaacaca |
726 |
Q |
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| T |
4709309 |
aatcaaatacatttgaagtatataaggtcgcccagtgaaatgttaacaccgccaaaacaca |
4709249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 4844726 - 4844636
Alignment:
| Q |
18 |
catatcggtgactggtgctataccttgtgtcatgcatcaactttatggaag-gccttgcttagctcatgctttagttcaagcaaatgaaat |
107 |
Q |
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| T |
4844726 |
catatcggtgacgagtgctataccttgtgtcatgcatcaactttgtgccagacccttgcttagctcaagctttggttcaagcaaatgaaat |
4844636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 4844311 - 4844248
Alignment:
| Q |
139 |
aaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagataaaatttgga |
202 |
Q |
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| T |
4844311 |
aaacaatttgaggcagaaaatgtagaagacaccaagaagagcatataatgagataaaatttgga |
4844248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 20 - 96
Target Start/End: Original strand, 40409765 - 40409841
Alignment:
| Q |
20 |
tatcggtgactggtgctataccttgtgtcatgcatcaactttatggaaggccttgcttagctcatgctttagttcaa |
96 |
Q |
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| T |
40409765 |
tatcggagactggtgctgtaccttgtgtcatgcatcaactttgtggtggaccttgcttagctcattctttaattcaa |
40409841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 39251241 - 39251162
Alignment:
| Q |
136 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat-aaaatttggagtttgtgatttt |
214 |
Q |
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|||| |||||||||||||||||| |||||||||| || ||||| ||||||| ||||| |||| ||||||||||||||||| |
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| T |
39251241 |
cacagacaatttgatgcagaaaacatacaagacaacaagaagaacatataacgagataaaaacttggagtttgtgatttt |
39251162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 39262318 - 39262221
Alignment:
| Q |
136 |
cacaaacaatttgatgcagaaaatatacaagacaccaggaagagcatataatgagat--aaaatttggagtttgtgattttgcattacgggaagtatt |
231 |
Q |
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|||| ||||||||||| |||||| |||||||||| || ||||||||||||| ||||| |||| ||| ||||||||||||| | |||||||| ||||| |
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| T |
39262318 |
cacagacaatttgatgaagaaaacatacaagacaacaagaagagcatataacgagataaaaaaattgaagtttgtgattttaccttacgggaggtatt |
39262221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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