View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14982_low_2 (Length: 869)
Name: NF14982_low_2
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14982_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 396
Target Start/End: Original strand, 43711893 - 43712272
Alignment:
| Q |
17 |
acatgtgaaagggtaattttggtaatcaattattgcatgtgagactttctttacatgtgcctgtagcaaaagaaggaaaaactttcttctaattaatgcg |
116 |
Q |
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| T |
43711893 |
acatgtgaaagggtaattttggtaatcaattattgcatgtgagactttctttacatgtgcctgtagcaaaagaaggaaaaactttcttctaattaatgcg |
43711992 |
T |
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| Q |
117 |
ccacttttgcttgctaatggctctaactattaactaacagttttaccaattgttagtttttctgttataactgtaagcttcagttctagttagactctgt |
216 |
Q |
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| T |
43711993 |
ccacttttgcttgctaatggctctaactattaactaacagttttaccaattgttagtttttctgttataactgtaagcttcagttctagttagactctgt |
43712092 |
T |
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| Q |
217 |
atcaannnnnnngtcaaccctccggtttttagggaagttaatagaaagttctactcggaggtaaatagagtctagccaaaaattataccatccagaaatt |
316 |
Q |
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| T |
43712093 |
atcaatttttttgtcaaccctccggtttttaggaaagttaatagaaagttctactaggaagtaaatagagtctagctaaaaattataccatcctgaaatt |
43712192 |
T |
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| Q |
317 |
taacttggttattacaaatgatctttcgtttagtggagtttattgatcatttgagcttaatcaagtaccaaagctgtgag |
396 |
Q |
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| T |
43712193 |
taacttggttattacaaataatctttcgtttagtggagtttattgatcatttgagcttaatcaagtaccaaagctgtgag |
43712272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 447 - 778
Target Start/End: Original strand, 43712306 - 43712639
Alignment:
| Q |
447 |
tcacgtaccaattcagttctttcaatcaaaatcatatcaaaaattgcaatactttcgtgtcaccactcaccacta-gttagcttaaaatagaaaggaaga |
545 |
Q |
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| T |
43712306 |
tcacgtaccaattcagttctttcaatcaaaatcatatcaaaaattgcaatactttcgtgtcaccactcaccactatgttagcttaaaatagaaaggaaaa |
43712405 |
T |
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| Q |
546 |
aaggnnnnnnnnnn-ctactattttgatgcaatggtttattggctagtgtttccaatctttaatttaatataaaactatttttatattataaattaaacg |
644 |
Q |
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| T |
43712406 |
aaaaaaaaaaaaaaactactattttgatgcaatggtttattggctagtgtttccaatctttaatttaatataaaactatttttatattataaattaaacg |
43712505 |
T |
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| Q |
645 |
aatttagatctaagtgacaaaatggagagtcatgctcaaaactagttggcctttggcagaatgtgttatataggagacaaaatgcgccatcccatatttt |
744 |
Q |
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| T |
43712506 |
aatttagatctaagtgacaaaatggagagtcatgctcaaaactagttggcctttggcagaatgtgttatataggagacaaaatgcgccatcccatatttt |
43712605 |
T |
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| Q |
745 |
caggacaaaattcgtctcatccatctaaactata |
778 |
Q |
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| T |
43712606 |
caggacaaaattcgtctcatccatctaaactata |
43712639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 775 - 861
Target Start/End: Original strand, 43712673 - 43712759
Alignment:
| Q |
775 |
tataatgaaaatgaaggcacatcaaaagataagaagtttatattaaaataaaatttagaaagaaatgcactcacccacccgtctctg |
861 |
Q |
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| T |
43712673 |
tataatgaaaatgaaggcacatcaaaagataagaagtttatattaaaataaaatttagaaagaaatgcactcacccacccgtctctg |
43712759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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