View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14982_low_3 (Length: 380)
Name: NF14982_low_3
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14982_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 48 - 365
Target Start/End: Original strand, 32212872 - 32213191
Alignment:
| Q |
48 |
tggcaagcatggatttgtctggctagctttcagaacatattggattactatctgaattgtggattttgtacgcattctactaatatattaaaatattcaa |
147 |
Q |
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| T |
32212872 |
tggcaagcatggatttgtctggctagctttcagaacatattggattactatctgaattgtggattttgtacgcattctactaatatattaaaatattcaa |
32212971 |
T |
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| Q |
148 |
attacnnnnnnnnn--aaatccaaagattgacttgtctgctaaatggaaatgtagaatttaatacgaccgtttccagaataaatgttttcacaaagtgca |
245 |
Q |
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| T |
32212972 |
attactttttttttttaaatccaaagattgacttgtctgctaaatggaaatgtagaatttaataggaccgtttccagaataaatgttttcacaaagtgca |
32213071 |
T |
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| Q |
246 |
gatttagaatgtctgcttaatgtaatctaacattcattacaatgttactaatgcaaatagtaacattttcacaaccagttatgggtgattggaatgtaaa |
345 |
Q |
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| T |
32213072 |
gatttagaatgtctgctaaatgtaatctaacattcattacaatgttactaatgcaaatagtaacattttcacaaccagttatgggtgattggaatgtaaa |
32213171 |
T |
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| Q |
346 |
cttttatgttacgtgcttat |
365 |
Q |
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|||||||||||||||||||| |
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| T |
32213172 |
cttttatgttacgtgcttat |
32213191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 10604871 - 10604950
Alignment:
| Q |
38 |
ttcaaatcactggcaagcatggatttgtctggctagctttcagaacatattggattactatctgaattgtggattttgta |
117 |
Q |
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| T |
10604871 |
ttcagatcattgtcaagcatggatttgtctggccagctttcttcagaaattggatcactatctgaattgcagattttgta |
10604950 |
T |
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