View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14982_low_4 (Length: 353)
Name: NF14982_low_4
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14982_low_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 348
Target Start/End: Complemental strand, 21902604 - 21902276
Alignment:
| Q |
21 |
acatgtcagtttcgtgtctatattggtgcttcattggcaaggataaaccttcatgtagattttgtaatcataacggtattgttatagtatatatatagac |
120 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
21902604 |
acatgtcagttccgtgtctatattggtgcttcattggcaaagataaatcttcatgtatattttgtaatcataacgatattattatagtatatatatagac |
21902505 |
T |
|
| Q |
121 |
gttaccttgtttcgctatttgagatggaactgctgttcaatgtacctccaccctgcaattttgagagaactt-tgaaaattgttttttgacgtatccata |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
21902504 |
attaccttgtttcgctatttgagatggaattgctgttcaatgtacctccaccctgaaattttgagagaacttgtgaaaattgttttttgacatatccata |
21902405 |
T |
|
| Q |
220 |
ttccatttatcaagtaaacgacttaagaaaacgacttataacttatatgaaaataatttaactgtatacttacttttttagttaagggccgcgctttaag |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21902404 |
ttccatttatcaagtaaacgacttaagaaaacgacttataacttatatgaaaataatttaactgtatacttacttttttagttaagggccgcgctttaag |
21902305 |
T |
|
| Q |
320 |
aacctgaaaacttgatttagcatgctcct |
348 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
21902304 |
aacctgaaaacttgattttgcatgctcct |
21902276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 26884008 - 26883972
Alignment:
| Q |
246 |
gaaaacgacttataacttatatgaaaataatttaact |
282 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
26884008 |
gaaaacgacttatagcttatatgaaaacaatttaact |
26883972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 282
Target Start/End: Complemental strand, 35364305 - 35364269
Alignment:
| Q |
246 |
gaaaacgacttataacttatatgaaaataatttaact |
282 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
35364305 |
gaaaacaacttataacttatataaaaataatttaact |
35364269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University