View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14982_low_7 (Length: 242)
Name: NF14982_low_7
Description: NF14982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14982_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 33069679 - 33069468
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33069679 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgctgctgttctagcaa |
33069580 |
T |
|
| Q |
112 |
tgtcttgtgattgatgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
211 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33069579 |
tgtcttgtgattgatgaagtaacactagaatgggttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
33069480 |
T |
|
| Q |
212 |
tagataaattcc |
223 |
Q |
| |
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|||||||||||| |
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| T |
33069479 |
tagataaattcc |
33069468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 223
Target Start/End: Complemental strand, 33079647 - 33079436
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
111 |
Q |
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|||||||||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33079647 |
acagattgtgtttgtagaaacctcaacatgtttctcaaggtgccaaatgcaaataatcctggtataagaaacttcatatagagtgctgctgttctagcaa |
33079548 |
T |
|
| Q |
112 |
tgtcttgtgattgatgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
211 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079547 |
tgtcttgtgattgatgaagtaacactagaatgggttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
33079448 |
T |
|
| Q |
212 |
tagataaattcc |
223 |
Q |
| |
|
|||||||||||| |
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| T |
33079447 |
tagataaattcc |
33079436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 33088131 - 33087919
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33088131 |
acagattgtgtttgtagaaacctcaacaagttttgcaagatactatatgcaaataatcctggtataagaaacttcatatagagtgctgctgttctagcaa |
33088032 |
T |
|
| Q |
112 |
tgtcttgtgattgatgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33088031 |
tgtcttgtgattgatgaagtaacactagaatgggttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
33087932 |
T |
|
| Q |
212 |
tagataaattccc |
224 |
Q |
| |
|
||| ||||||||| |
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| T |
33087931 |
taggtaaattccc |
33087919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 33061712 - 33061500
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33061712 |
acagattgtgtttgtagaaacctcaacaagttttgcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
33061613 |
T |
|
| Q |
112 |
tgtcttgtgattgatgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
211 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| ||| |
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| T |
33061612 |
tgtcttgagattgatgaagtaacactagaatgtgttctgtatagaaccaaataatggatataaatattgaaaaaatgaaagatataatgcaagagccttg |
33061513 |
T |
|
| Q |
212 |
tagataaattccc |
224 |
Q |
| |
|
||||||||||||| |
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|
| T |
33061512 |
tagataaattccc |
33061500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 33048598 - 33048386
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33048598 |
acagattgtgtttgtagaaacctcaacaagttttgcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgctgctgttctagcaa |
33048499 |
T |
|
| Q |
112 |
tgtcttgtgattgatgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatgatggaaaaaataaaagatataatgcaagagctttg |
211 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||||||||||||||||| ||| |
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| T |
33048498 |
tgtcttgagattgatgaagtaaaactagaatgtgttctgtatagaaccaaataatggatataaatattgaaaaaatgaaagatataatgcaagagccttg |
33048399 |
T |
|
| Q |
212 |
tagataaattccc |
224 |
Q |
| |
|
||||||||||||| |
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|
| T |
33048398 |
tagataaattccc |
33048386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 97
Target Start/End: Complemental strand, 33095627 - 33095542
Alignment:
| Q |
12 |
acagattgtgttagtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgc |
97 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33095627 |
acagattgtgtttgtagaaacctcaacaagttttgcaagatactatatgcaaataatcctggtataagaaacttcatatagagtgc |
33095542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 18485706 - 18485510
Alignment:
| Q |
25 |
gtagaaacctcaacatgtttctcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgcagctgttctagcaatgtcttgtgattg |
124 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| |
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| T |
18485706 |
gtagaaatctcaacatgttttgcaagatgctatatgcaaataatcctggtataagaaacttcatatagagtgctgttgttctagcaatgtcttgagattg |
18485607 |
T |
|
| Q |
125 |
atgaagtagcactagaatgtgttctgtatagaaccaaataattgatataatg-atggaaaaaataaaagatataatgcaagagctttgtagataaattcc |
223 |
Q |
| |
|
|||||| |||||||| ||| ||||||||| ||||||||||||||| ||| ||||||| ||||||| |||||| |||| ||||| |||||||| |
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|
| T |
18485606 |
gggaagtaacactagaa--acttc-aaatagaaccatataattgatataatgaatgaaaaaaatgaaagata-aatgcaggagccttgtaagtaaattcc |
18485511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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